Rhodococcus ruber str. R1

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber str. R1 is a Gram-positive bacterium commonly found in soil environments. This microorganism is characterized by its ability to degrade various organic compounds, which contributes to its ecological role in the biogeochemical cycling of nutrients within terrestrial ecosystems. As a member of the genus Rhodococcus, R. ruber str. R1 exhibits notable metabolic versatility, enabling it to utilize a range of substrates for growth. This adaptability not only facilitates its survival in diverse soil conditions but also positions it as a potential candidate for bioremediation applications, especially in the breakdown of pollutants. The presence of R. ruber str. R1 in soil highlights its significance in maintaining soil health and fertility, as its metabolic activities can enhance the availability of nutrients for other soil organisms. Furthermore, the bacterium's interactions with other microbial communities may influence soil structure and function, thereby playing a crucial role in the ecosystem dynamics of soil habitats. Understanding the ecological functions of R. ruber str. R1 could provide insights into its potential applications in sustainable agricultural practices and environmental management strategies.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
StrainR1

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain R1 plasmid unnamed2, complete sequence.

Gene Summary

Adenine Count

4793 bp

Thymine Count

5098 bp

Guanine Count

11390 bp

Cytosine Count

11735 bp

Genome Length

33016 bp

Protein-coding Genes

33 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
16s rrna (guanine(966)-n(2))-methyltransferase rsmdE2561_RS09510Not AvailablePositive2078156 - 207878822353.8
pantetheine-phosphate adenylyltransferaseE2561_RS09515Not AvailablePositive2078785 - 207927917837.4
diviva domain-containing proteinE2561_RS09520Not AvailablePositive2079447 - 208020827787.8
yced family proteinE2561_RS09525Not AvailablePositive2080326 - 208094021928.7
50s ribosomal protein l32E2561_RS09530Not AvailablePositive2080943 - 20811256589.96
ribonuclease iiiE2561_RS09535Not AvailablePositive2081146 - 208190726351.1
bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyaseE2561_RS09540Not AvailablePositive2081914 - 208278331625.2
hypothetical proteinE2561_RS09545Not AvailablePositive2082877 - 208334715848.2
sdr family oxidoreductaseE2561_RS09550Not AvailableNegative2083357 - 208421130194.0
hypothetical proteinE2561_RS25475Not AvailableNegative2084208 - 20844839868.61

Displaying genes 1961 – 1970 of 4944 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.