Rhodococcus ruber str. R1

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber str. R1 is a Gram-positive bacterium commonly found in soil environments. This microorganism is characterized by its ability to degrade various organic compounds, which contributes to its ecological role in the biogeochemical cycling of nutrients within terrestrial ecosystems. As a member of the genus Rhodococcus, R. ruber str. R1 exhibits notable metabolic versatility, enabling it to utilize a range of substrates for growth. This adaptability not only facilitates its survival in diverse soil conditions but also positions it as a potential candidate for bioremediation applications, especially in the breakdown of pollutants. The presence of R. ruber str. R1 in soil highlights its significance in maintaining soil health and fertility, as its metabolic activities can enhance the availability of nutrients for other soil organisms. Furthermore, the bacterium's interactions with other microbial communities may influence soil structure and function, thereby playing a crucial role in the ecosystem dynamics of soil habitats. Understanding the ecological functions of R. ruber str. R1 could provide insights into its potential applications in sustainable agricultural practices and environmental management strategies.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
StrainR1

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain R1 plasmid unnamed2, complete sequence.

Gene Summary

Adenine Count

4793 bp

Thymine Count

5098 bp

Guanine Count

11390 bp

Cytosine Count

11735 bp

Genome Length

33016 bp

Protein-coding Genes

33 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
l-glutamate gamma-semialdehyde dehydrogenaseE2561_RS06950Not AvailablePositive1488890 - 149053059139.8
proline dehydrogenase family proteinE2561_RS06955Not AvailablePositive1490527 - 149154636116.3
rhomboid family intramembrane serine proteaseE2561_RS06960Not AvailablePositive1491623 - 149229422335.0
acyl-coa synthetaseE2561_RS06965Not AvailablePositive1492300 - 149371850031.0
pucr family transcriptional regulatorE2561_RS06970Not AvailablePositive1493849 - 149511446300.6
substrate-binding domain-containing proteinE2561_RS06975Not AvailablePositive1495265 - 149681853485.1
amino acid permeaseE2561_RS06980Not AvailableNegative1496841 - 149822349182.3
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferaseE2561_RS06985Not AvailableNegative1498240 - 149919332903.2
succinyl-diaminopimelate desuccinylaseE2561_RS06990Not AvailablePositive1499267 - 150034337879.8
tigr00730 family rossman fold proteinE2561_RS06995Not AvailablePositive1500400 - 150120629248.6

Displaying genes 1441 – 1450 of 4944 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.