Clostridioides difficile

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Peptostreptococcales

Family

Peptostreptococcaceae

Genus

Clostridioides

Description

Clostridioides difficile, also known as C. difficile, is a gram-positive, spore-forming bacterium that thrives in a temperature range of 25-40°C, categorizing it as belonging to the temperate group. As a heterotroph, C. difficile obtains its energy by breaking down organic matter, specifically sugars and amino acids, in the absence of oxygen. This anaerobic metabolism allows it to produce energy through fermentation, resulting in the production of acetate and butyrate. C. difficile stains positive on gram stains, indicating its thick peptidoglycan layer. The bacterium is typically found in a rod-shaped, or bacillus, morphology. It can inhabit all body sites, including the gut, skin, and respiratory tract, across all species. However, it is most commonly associated with colonic infections in human beings. As an obligate anaerobe, C. difficile requires a low-oxygen environment to survive, which makes it well-suited for the gut, where oxygen levels are relatively low. In this anaerobic setting, C. difficile produces toxins A and B, which can cause severe gastrointestinal symptoms, including diarrhea, abdominal pain, and colitis. In the clinical setting, C. difficile infection (CDI) is a significant public health concern, particularly among older adults and those with compromised immune systems. CDI can lead to severe complications, including pseudomembranous colitis, toxic megacolon, and even death. Treatment for CDI typically involves antibiotics, often in combination with fecal microbiota transplantation (FMT), which involves infusing a mixture of healthy gut bacteria into the patient's colon.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderPeptostreptococcales
FamilyPeptostreptococcaceae
GenusClostridioides
SpeciesClostridioides difficile
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridioides difficile
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementChains - Pairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityHuman

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
xanthine dehydrogenaseSAMEA747647_03528Not AvailableNegative3705803 - 370801980829.4
xanthine dehydrogenase iron-sulfur binding subunit xdhc2SAMEA747647_03529Not AvailableNegative3708022 - 370849217191.9
amidohydrolaseSAMEA747647_03530Not AvailableNegative3708554 - 370994851528.5
xanthine/uracile permeaseSAMEA747647_03531Not AvailableNegative3710021 - 371138246858.9
xanthine/uracile permeaseSAMEA747647_03532Not AvailableNegative3711679 - 371302847215.5
sigma-54 dependent transcriptional regulatorSAMEA747647_03533Not AvailableNegative3713356 - 371439639316.7
streptogramin a acetyltransferase (virginiamycin acetyltransferase d) (vat(d))SAMEA747647_03534Not AvailableNegative3714804 - 371543624143.8
integrase tn1549-like, ctn4-orf34SAMEA747647_03535Not AvailableNegative3715508 - 371586113873.8
excisionaseSAMEA747647_03536Not AvailableNegative3715939 - 37161428030.69
extrachromosomal origin proteinSAMEA747647_03537Not AvailableNegative3716532 - 37167628836.98

Displaying genes 3431 – 3440 of 11846 in total

Pathways

1 pathway

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Severe diarrheaCausesPMC10881109
ColitisCausesPMC12366080
ColitisCausesPMC5288394
DiarrheaCausesPMC10169446
Persistent infectionCausesPMC11306097
CdiCausesPMC11354687
Healthcare-associated colitisCausesPMC11355982
Pseudomembranous colitisCausesPMC11355982
Toxic megacolonCausesPMC11355982
EnterocolitisCausesPMC11355982

Displaying health effects 1 – 10 of 38 in total