Clostridioides difficile

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Peptostreptococcales

Family

Peptostreptococcaceae

Genus

Clostridioides

Description

Clostridioides difficile, also known as C. difficile, is a gram-positive, spore-forming bacterium that thrives in a temperature range of 25-40°C, categorizing it as belonging to the temperate group. As a heterotroph, C. difficile obtains its energy by breaking down organic matter, specifically sugars and amino acids, in the absence of oxygen. This anaerobic metabolism allows it to produce energy through fermentation, resulting in the production of acetate and butyrate. C. difficile stains positive on gram stains, indicating its thick peptidoglycan layer. The bacterium is typically found in a rod-shaped, or bacillus, morphology. It can inhabit all body sites, including the gut, skin, and respiratory tract, across all species. However, it is most commonly associated with colonic infections in human beings. As an obligate anaerobe, C. difficile requires a low-oxygen environment to survive, which makes it well-suited for the gut, where oxygen levels are relatively low. In this anaerobic setting, C. difficile produces toxins A and B, which can cause severe gastrointestinal symptoms, including diarrhea, abdominal pain, and colitis. In the clinical setting, C. difficile infection (CDI) is a significant public health concern, particularly among older adults and those with compromised immune systems. CDI can lead to severe complications, including pseudomembranous colitis, toxic megacolon, and even death. Treatment for CDI typically involves antibiotics, often in combination with fecal microbiota transplantation (FMT), which involves infusing a mixture of healthy gut bacteria into the patient's colon.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderPeptostreptococcales
FamilyPeptostreptococcaceae
GenusClostridioides
SpeciesClostridioides difficile
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridioides difficile
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementChains - Pairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityHuman

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive132566 - 132577Not Available
Integrase/site specific recombinaseSAMEA747647_00101Not AvailableNegative132636 - 13357436316.8
Hypothetical proteinSAMEA747647_00102Not AvailableNegative133609 - 13392012369.9
Putative holinSAMEA747647_00103Not AvailableNegative133921 - 1341729426.0
Hypothetical proteinSAMEA747647_00104Not AvailableNegative134184 - 13480122798.2
Putative cell wall hydrolase/autolysinSAMEA747647_00105Not AvailableNegative134813 - 13562830175.2
Hypothetical proteinSAMEA747647_00106Not AvailableNegative135709 - 1358796857.28
Hypothetical proteinSAMEA747647_00107Not AvailableNegative135905 - 13623112498.8
Virion structure proteinSAMEA747647_00108Not AvailableNegative136246 - 13814772295.3
Hypothetical proteinSAMEA747647_00109Not AvailableNegative138175 - 1383576856.25

Displaying genes 1 – 10 of 11846 in total

Pathways

1 pathway

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

24 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm00018522-hydroxy-2-(4-hydroxyphenyl)acetateC8H7O4Chemical structure of 2-hydroxy-2-(4-hydroxyphenyl)acetateNot available
Average167.141Da
Monoisotopic167.0349823Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm0003346(2R)-2-phosphoglycerateC3H4O7PChemical structure of (2R)-2-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0007586(R)-2-hydroxy-4-methylpentanoyl-CoAC27H46N7O18P3SChemical structure of (R)-2-hydroxy-4-methylpentanoyl-CoANot available
Average881.677Da
Monoisotopic881.1832879Da
BASm00075874-methylpent-2-enoyl-CoAC27H40N7O17P3SChemical structure of 4-methylpent-2-enoyl-CoANot available
Average859.63Da
Monoisotopic859.1436193Da
BASm0014031Butyric acidC4H8O2Chemical structure of Butyric acid107-92-6
Average88.1051Da
Monoisotopic88.0524295Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da

Displaying 1–10 of 24 metabolites

Health Effects

Health ConditionRelationReference
Severe diarrheaCausesPMC10881109
ColitisCausesPMC12366080
ColitisCausesPMC5288394
DiarrheaCausesPMC10169446
Persistent infectionCausesPMC11306097
CdiCausesPMC11354687
Healthcare-associated colitisCausesPMC11355982
Pseudomembranous colitisCausesPMC11355982
Toxic megacolonCausesPMC11355982
EnterocolitisCausesPMC11355982

Displaying health effects 1 – 10 of 38 in total