Clostridioides difficile

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Peptostreptococcales

Family

Peptostreptococcaceae

Genus

Clostridioides

Description

Clostridioides difficile, also known as C. difficile, is a gram-positive, spore-forming bacterium that thrives in a temperature range of 25-40°C, categorizing it as belonging to the temperate group. As a heterotroph, C. difficile obtains its energy by breaking down organic matter, specifically sugars and amino acids, in the absence of oxygen. This anaerobic metabolism allows it to produce energy through fermentation, resulting in the production of acetate and butyrate. C. difficile stains positive on gram stains, indicating its thick peptidoglycan layer. The bacterium is typically found in a rod-shaped, or bacillus, morphology. It can inhabit all body sites, including the gut, skin, and respiratory tract, across all species. However, it is most commonly associated with colonic infections in human beings. As an obligate anaerobe, C. difficile requires a low-oxygen environment to survive, which makes it well-suited for the gut, where oxygen levels are relatively low. In this anaerobic setting, C. difficile produces toxins A and B, which can cause severe gastrointestinal symptoms, including diarrhea, abdominal pain, and colitis. In the clinical setting, C. difficile infection (CDI) is a significant public health concern, particularly among older adults and those with compromised immune systems. CDI can lead to severe complications, including pseudomembranous colitis, toxic megacolon, and even death. Treatment for CDI typically involves antibiotics, often in combination with fecal microbiota transplantation (FMT), which involves infusing a mixture of healthy gut bacteria into the patient's colon.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderPeptostreptococcales
FamilyPeptostreptococcaceae
GenusClostridioides
SpeciesClostridioides difficile
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridioides difficile
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementChains - Pairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityHuman

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna-directed rna polymerase subunit omegaSAMEA747647_02245Not AvailableNegative2301739 - 230200510198.1
guanylate kinaseSAMEA747647_02246Not AvailableNegative2302008 - 230262523373.3
yicc-like domain-containing proteinSAMEA747647_02247Not AvailableNegative2302655 - 230353634217.9
diaminopimelate epimeraseSAMEA747647_02248Not AvailableNegative2303540 - 230437030650.1
low specificity l-threonine aldolaseSAMEA747647_02249Not AvailableNegative2304657 - 230569137930.1
fibronectin-binding protein aSAMEA747647_02250Not AvailablePositive2305987 - 230776267696.4
antibiotic resistance abc transporter atp-binding proteinSAMEA747647_02251Not AvailableNegative2307977 - 230962963157.6
abc transporter uracil-specific permeaseSAMEA747647_02252Not AvailableNegative2309928 - 231113942427.6
bifunctional pyrimidine operon regulatory protein/uracil phosphoribosyltransferaseSAMEA747647_02253Not AvailableNegative2311423 - 231195619762.0
pseudouridylate synthaseSAMEA747647_02254Not AvailableNegative2312316 - 231322735102.6

Displaying genes 2251 – 2260 of 11846 in total

Pathways

1 pathway

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Severe diarrheaCausesPMC10881109
ColitisCausesPMC12366080
ColitisCausesPMC5288394
DiarrheaCausesPMC10169446
Persistent infectionCausesPMC11306097
CdiCausesPMC11354687
Healthcare-associated colitisCausesPMC11355982
Pseudomembranous colitisCausesPMC11355982
Toxic megacolonCausesPMC11355982
EnterocolitisCausesPMC11355982

Displaying health effects 1 – 10 of 38 in total