Clostridioides difficile

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Peptostreptococcales

Family

Peptostreptococcaceae

Genus

Clostridioides

Description

Clostridioides difficile, also known as C. difficile, is a gram-positive, spore-forming bacterium that thrives in a temperature range of 25-40°C, categorizing it as belonging to the temperate group. As a heterotroph, C. difficile obtains its energy by breaking down organic matter, specifically sugars and amino acids, in the absence of oxygen. This anaerobic metabolism allows it to produce energy through fermentation, resulting in the production of acetate and butyrate. C. difficile stains positive on gram stains, indicating its thick peptidoglycan layer. The bacterium is typically found in a rod-shaped, or bacillus, morphology. It can inhabit all body sites, including the gut, skin, and respiratory tract, across all species. However, it is most commonly associated with colonic infections in human beings. As an obligate anaerobe, C. difficile requires a low-oxygen environment to survive, which makes it well-suited for the gut, where oxygen levels are relatively low. In this anaerobic setting, C. difficile produces toxins A and B, which can cause severe gastrointestinal symptoms, including diarrhea, abdominal pain, and colitis. In the clinical setting, C. difficile infection (CDI) is a significant public health concern, particularly among older adults and those with compromised immune systems. CDI can lead to severe complications, including pseudomembranous colitis, toxic megacolon, and even death. Treatment for CDI typically involves antibiotics, often in combination with fecal microbiota transplantation (FMT), which involves infusing a mixture of healthy gut bacteria into the patient's colon.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderPeptostreptococcales
FamilyPeptostreptococcaceae
GenusClostridioides
SpeciesClostridioides difficile
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridioides difficile
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementChains - Pairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityHuman

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
two-component sensor histidine kinaseSAMEA747647_02040Not AvailablePositive2081024 - 208204339255.4
anhydro-n-acetylmuramic acid kinaseSAMEA747647_02041Not AvailablePositive2082483 - 208363442190.8
membrane proteinSAMEA747647_02042Not AvailablePositive2083636 - 208403415184.7
pts system lactose/cellobiose-family transporter subunit iibSAMEA747647_02043Not AvailablePositive2084296 - 208460411066.4
pts system lactose/cellobiose-family transporter subunit iicSAMEA747647_02044Not AvailablePositive2084693 - 208603948889.7
outer surface proteinSAMEA747647_02045Not AvailablePositive2086272 - 208736942488.2
n-acetylmuramic acid 6-phosphate etheraseSAMEA747647_02046Not AvailablePositive2087468 - 208838233090.4
badf/badg/bcra/bcrd type atpaseSAMEA747647_02047Not AvailablePositive2088492 - 208941233622.6
rpir family transcriptional regulatorSAMEA747647_02048Not AvailablePositive2089429 - 209028031842.6
chw repeat-/cell adhesion domain-containing transglutaminase-like proteaseSAMEA747647_02049Not AvailablePositive2090892 - 209195338760.7

Displaying genes 2051 – 2060 of 11846 in total

Pathways

1 pathway

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Severe diarrheaCausesPMC10881109
ColitisCausesPMC12366080
ColitisCausesPMC5288394
DiarrheaCausesPMC10169446
Persistent infectionCausesPMC11306097
CdiCausesPMC11354687
Healthcare-associated colitisCausesPMC11355982
Pseudomembranous colitisCausesPMC11355982
Toxic megacolonCausesPMC11355982
EnterocolitisCausesPMC11355982

Displaying health effects 1 – 10 of 38 in total