Herbaspirillum seropedicae str. AU13965

SpirillaMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Herbaspirillum

Description

Herbaspirillum seropedicae str. AU13965 is a Gram-negative, spirilla-shaped bacterium that is motile and possesses true flagella, enabling it to navigate its environment effectively. This strain exhibits an aerobic oxygen requirement and is classified as mesophilic, thriving in moderate temperature conditions. It is primarily found in the rhizosphere, where it engages in a free-living biotic relationship with plant roots, contributing to the complex interactions within this habitat. The genome of Herbaspirillum seropedicae str. AU13965 is characterized by two replicons, as evidenced by its genome accessions NZ_CP034395.1 and NZ_CP034394.1. This genomic structure may facilitate the bacterium's adaptability and functional diversity within its ecological niche. The presence of Herbaspirillum seropedicae str. AU13965 in the rhizosphere suggests its potential role in influencing plant health and nutrient uptake, highlighting its significance in soil microbiology and plant-microbe interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusHerbaspirillum
SpeciesHerbaspirillum seropedicae
StrainAU13965

Profile

Physiology
Gram staining propertiesGram-negative
ShapeSpirilla
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Herbaspirillum seropedicae str. AU13965
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
Habitatrhizosphere
Biotic relationshipFree living
Host(s)Homo sapiens, Triticum aestivum, Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Herbaspirillum seropedicae strain AU13965 chromosome, complete

Gene Summary

Adenine Count

988071 bp

Thymine Count

984583 bp

Guanine Count

1688182 bp

Cytosine Count

1689162 bp

Genome Length

5349998 bp

Protein-coding Genes

4674 genes

Non-Coding Genes

91 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system baseplate subunit tsseEJD96_RS03985Not AvailablePositive800047 - 80053517886.5
type vi secretion system baseplate subunit tssfEJD96_RS03990Not AvailablePositive800536 - 80238068003.5
type vi secretion system baseplate subunit tssgEJD96_RS03995Not AvailablePositive802344 - 80342640685.9
type vi secretion system atpase tsshEJD96_RS04000Not AvailablePositive803465 - 80613496701.9
type vi secretion system vgr family proteinEJD96_RS04005Not AvailablePositive806246 - 809110100721.0
duf4123 domain-containing proteinEJD96_RS04010Not AvailablePositive809129 - 81010636862.4
t6ss effector bth_i2691 family proteinEJD96_RS04015Not AvailablePositive810111 - 812930103643.0
putative type vi secretion system effectorEJD96_RS04020Not AvailablePositive812931 - 81366227462.4
putative type vi secretion system effectorEJD96_RS04025Not AvailablePositive813676 - 81441927713.5
putative type vi secretion system effectorEJD96_RS04030Not AvailablePositive814482 - 81506021307.7

Displaying genes 771 – 780 of 4818 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.