Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Oxalobacteraceae
Genus
Herbaspirillum
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Oxalobacteraceae |
| Genus | Herbaspirillum |
| Species | Herbaspirillum seropedicae |
| Strain | AU13965 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Spirilla |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | rhizosphere |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Triticum aestivum, Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Herbaspirillum seropedicae strain AU13965 chromosome, complete
Gene Summary
Adenine Count
988071 bp
Thymine Count
984583 bp
Guanine Count
1688182 bp
Cytosine Count
1689162 bp
Genome Length
5349998 bp
Protein-coding Genes
4674 genes
Non-Coding Genes
91 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system baseplate subunit tsse | EJD96_RS03985 | Not Available | Positive | 800047 - 800535 | 17886.5 |
| type vi secretion system baseplate subunit tssf | EJD96_RS03990 | Not Available | Positive | 800536 - 802380 | 68003.5 |
| type vi secretion system baseplate subunit tssg | EJD96_RS03995 | Not Available | Positive | 802344 - 803426 | 40685.9 |
| type vi secretion system atpase tssh | EJD96_RS04000 | Not Available | Positive | 803465 - 806134 | 96701.9 |
| type vi secretion system vgr family protein | EJD96_RS04005 | Not Available | Positive | 806246 - 809110 | 100721.0 |
| duf4123 domain-containing protein | EJD96_RS04010 | Not Available | Positive | 809129 - 810106 | 36862.4 |
| t6ss effector bth_i2691 family protein | EJD96_RS04015 | Not Available | Positive | 810111 - 812930 | 103643.0 |
| putative type vi secretion system effector | EJD96_RS04020 | Not Available | Positive | 812931 - 813662 | 27462.4 |
| putative type vi secretion system effector | EJD96_RS04025 | Not Available | Positive | 813676 - 814419 | 27713.5 |
| putative type vi secretion system effector | EJD96_RS04030 | Not Available | Positive | 814482 - 815060 | 21307.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


