Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Oxalobacteraceae
Genus
Herbaspirillum
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Oxalobacteraceae |
| Genus | Herbaspirillum |
| Species | Herbaspirillum seropedicae |
| Strain | AU13965 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Spirilla |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | rhizosphere |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Triticum aestivum, Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Herbaspirillum seropedicae strain AU13965 chromosome, complete
Gene Summary
Adenine Count
988071 bp
Thymine Count
984583 bp
Guanine Count
1688182 bp
Cytosine Count
1689162 bp
Genome Length
5349998 bp
Protein-coding Genes
4674 genes
Non-Coding Genes
91 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent protease atpase subunit hslu | EJD96_RS01240 | Not Available | Positive | 197209 - 198555 | 50137.3 |
| hypothetical protein | EJD96_RS01245 | Not Available | Positive | 198578 - 198781 | 7344.74 |
| porin | EJD96_RS01250 | Not Available | Positive | 199103 - 200275 | 40126.6 |
| tetratricopeptide repeat protein | EJD96_RS01255 | Not Available | Positive | 200795 - 202336 | 56756.4 |
| tonb-dependent receptor | EJD96_RS01260 | Not Available | Negative | 202390 - 204504 | 76452.8 |
| type ii secretion system major pseudopilin gspg | EJD96_RS01265 | Not Available | Negative | 204730 - 205197 | 17417.7 |
| iron donor protein cyay | EJD96_RS01270 | Not Available | Negative | 205307 - 205639 | 12028.9 |
| lps translocon maturation chaperone lptm | EJD96_RS01275 | Not Available | Positive | 205689 - 205907 | 7352.9 |
| diaminopimelate decarboxylase | EJD96_RS01280 | Not Available | Positive | 205967 - 207259 | 46270.5 |
| phage tail protein | EJD96_RS01285 | Not Available | Positive | 207575 - 208504 | 31899.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


