Herbaspirillum seropedicae str. AU13965

SpirillaMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Herbaspirillum

Description

Herbaspirillum seropedicae str. AU13965 is a Gram-negative, spirilla-shaped bacterium that is motile and possesses true flagella, enabling it to navigate its environment effectively. This strain exhibits an aerobic oxygen requirement and is classified as mesophilic, thriving in moderate temperature conditions. It is primarily found in the rhizosphere, where it engages in a free-living biotic relationship with plant roots, contributing to the complex interactions within this habitat. The genome of Herbaspirillum seropedicae str. AU13965 is characterized by two replicons, as evidenced by its genome accessions NZ_CP034395.1 and NZ_CP034394.1. This genomic structure may facilitate the bacterium's adaptability and functional diversity within its ecological niche. The presence of Herbaspirillum seropedicae str. AU13965 in the rhizosphere suggests its potential role in influencing plant health and nutrient uptake, highlighting its significance in soil microbiology and plant-microbe interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusHerbaspirillum
SpeciesHerbaspirillum seropedicae
StrainAU13965

Profile

Physiology
Gram staining propertiesGram-negative
ShapeSpirilla
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Herbaspirillum seropedicae str. AU13965
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
Habitatrhizosphere
Biotic relationshipFree living
Host(s)Homo sapiens, Triticum aestivum, Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Herbaspirillum seropedicae strain AU13965 chromosome, complete

Gene Summary

Adenine Count

988071 bp

Thymine Count

984583 bp

Guanine Count

1688182 bp

Cytosine Count

1689162 bp

Genome Length

5349998 bp

Protein-coding Genes

4674 genes

Non-Coding Genes

91 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
restriction endonucleaseEJD96_RS10835Not AvailableNegative2358073 - 235892132343.3
helix-turn-helix domain-containing proteinEJD96_RS24280Not AvailablePositive2359443 - 23595865032.94
type ii toxin-antitoxin system rnla family toxinEJD96_RS10850Not AvailablePositive2360139 - 236121240107.1
type ii toxin-antitoxin system rnlb family antitoxinEJD96_RS10855Not AvailablePositive2361213 - 236155112287.9
udp-glucose 4-epimerase family proteinEJD96_RS10860Not AvailableNegative2362084 - 236303134153.4
cupin domain-containing proteinEJD96_RS10865Not AvailableNegative2363140 - 236355015180.9
duf72 domain-containing proteinEJD96_RS10870Not AvailablePositive2363687 - 236460135266.1
7-carboxy-7-deazaguanine synthaseEJD96_RS10875Not AvailablePositive2364744 - 236537923345.0
6-carboxytetrahydropterin synthase quedEJD96_RS10880Not AvailablePositive2365473 - 236591916649.0
trna adenosine(34) deaminase tadaEJD96_RS10885Not AvailablePositive2365982 - 236647617550.3

Displaying genes 2151 – 2160 of 4818 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.