Aliivibrio fischeri

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Aliivibrio

Description

Aliivibrio fischeri is a Gram-negative, rod-shaped bacterium that typically exists as single cells and exhibits facultative anaerobic metabolism, allowing it to thrive in a variety of oxygen conditions. This microbe is a heterotroph, deriving its energy from organic compounds, which enables it to occupy diverse habitats, although specific environmental contexts were not provided. Optimal growth of A. fischeri occurs at a temperature of approximately 20.0°C, suggesting a preference for cooler environments, which may influence its ecological niches and interactions within microbial communities. The ability to grow in both aerobic and anaerobic conditions indicates a metabolic flexibility that may enhance its survival in fluctuating environments. Notably, A. fischeri is known to engage in symbiotic relationships with certain marine organisms, particularly in association with bioluminescent systems. This trait not only highlights its ecological significance but also suggests that its metabolic capabilities may play a role in the light-emitting processes of its hosts. The versatility in habitat and energy sourcing further underscores the adaptive strategies employed by A. fischeri in various marine ecosystems, where it likely contributes to nutrient cycling and microbial dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusAliivibrio
SpeciesAliivibrio fischeri
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Aliivibrio fischeri
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipSymbiotic
Host(s)Sparus aurata, Euprymna scolopes, Sepiida
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNon-pathogenic

Genome Summary

Aliivibrio fischeri strain 5F7 5F7_I01_contig0084, whole genome

Gene Summary

Adenine Count

1325098 bp

Thymine Count

1316635 bp

Guanine Count

795721 bp

Cytosine Count

841197 bp

Genome Length

4279630 bp

Protein-coding Genes

3902 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
adenylate kinaseBEI47_002180Not AvailableNegative475605 - 47624923317.9
molecular chaperone htpgBEI47_002185Not AvailableNegative476511 - 47840671651.5
transcriptional regulatorBEI47_002190Not AvailablePositive478637 - 47951832797.5
regulatory protein toxsBEI47_002195Not AvailablePositive479509 - 48005420801.0
phosphodiesteraseBEI47_002200Not AvailableNegative480123 - 48067119981.0
tigr01777 family oxidoreductaseBEI47_002205Not AvailablePositive480799 - 48170433602.1
glycine betaine/l-proline abc transporter atp-binding protein provBEI47_002210Not AvailablePositive482090 - 48327743312.9
glycine betaine/l-proline abc transporter permease prowBEI47_002215Not AvailablePositive483281 - 48436339192.9
glycine betaine/l-proline abc transporter substrate-binding protein proxBEI47_002220Not AvailablePositive484366 - 48537337030.7
sdr family oxidoreductaseBEI47_002225Not AvailablePositive485558 - 48638531057.4

Displaying genes 471 – 480 of 3969 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

6 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0003276S-(5-deoxy-D-ribos-5-yl)-L-homocysteineC9H17NO6SChemical structure of S-(5-deoxy-D-ribos-5-yl)-L-homocysteine15912-98-8
Average267.299Da
Monoisotopic267.077658Da
BASm0015880N-(3-oxodecanoyl)-L-homoserine lactoneC14H23NO4Chemical structure of N-(3-oxodecanoyl)-L-homoserine lactoneNULL
Average269.341Da
Monoisotopic269.162708225Da
BASm00172855-MethylthioriboseC6H12O4SChemical structure of 5-Methylthioribose23656-67-9
Average180.222Da
Monoisotopic180.045629562Da
BASm00189185'-DeoxyriboseC5H10O4Chemical structure of 5'-DeoxyriboseNULL
Average134.1305Da
Monoisotopic134.057908808Da
BASm0034737(6S)-5,6,7,8-tetrahydrofolic acidC19H23N7O6Chemical structure of (6S)-5,6,7,8-tetrahydrofolic acidNULL
Average445.4292Da
Monoisotopic445.170981503Da

Displaying 1–6 of 6 metabolites

Health Effects

No health effects information available for this bacterium.