Aliivibrio fischeri

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Aliivibrio

Description

Aliivibrio fischeri is a Gram-negative, rod-shaped bacterium that typically exists as single cells and exhibits facultative anaerobic metabolism, allowing it to thrive in a variety of oxygen conditions. This microbe is a heterotroph, deriving its energy from organic compounds, which enables it to occupy diverse habitats, although specific environmental contexts were not provided. Optimal growth of A. fischeri occurs at a temperature of approximately 20.0°C, suggesting a preference for cooler environments, which may influence its ecological niches and interactions within microbial communities. The ability to grow in both aerobic and anaerobic conditions indicates a metabolic flexibility that may enhance its survival in fluctuating environments. Notably, A. fischeri is known to engage in symbiotic relationships with certain marine organisms, particularly in association with bioluminescent systems. This trait not only highlights its ecological significance but also suggests that its metabolic capabilities may play a role in the light-emitting processes of its hosts. The versatility in habitat and energy sourcing further underscores the adaptive strategies employed by A. fischeri in various marine ecosystems, where it likely contributes to nutrient cycling and microbial dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusAliivibrio
SpeciesAliivibrio fischeri
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Aliivibrio fischeri
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipSymbiotic
Host(s)Sparus aurata, Euprymna scolopes, Sepiida
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNon-pathogenic

Genome Summary

Aliivibrio fischeri strain 5F7 5F7_I01_contig0084, whole genome

Gene Summary

Adenine Count

1325098 bp

Thymine Count

1316635 bp

Guanine Count

795721 bp

Cytosine Count

841197 bp

Genome Length

4279630 bp

Protein-coding Genes

3902 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
grx4 family monothiol glutaredoxinBEI47_001530Not AvailableNegative325951 - 32628612367.9
superoxide dismutaseBEI47_001535Not AvailablePositive326521 - 32710521586.1
vc2046/so_2500 family proteinBEI47_001540Not AvailablePositive327308 - 32781419114.4
sdr family oxidoreductaseBEI47_001545Not AvailablePositive328037 - 32870824743.2
bifunctional acetaldehyde-coa/alcohol dehydrogenaseBEI47_001550Not AvailableNegative328897 - 33157296446.6
ion transporterBEI47_001555Not AvailablePositive332155 - 33301532295.3
hypothetical proteinBEI47_001560Not AvailableNegative333037 - 3331865194.32
yeac family proteinBEI47_001565Not AvailableNegative333332 - 33361610619.6
duf2989 domain-containing proteinBEI47_001570Not AvailablePositive333740 - 33458231959.9
peptide-methionine (r)-s-oxide reductase msrbBEI47_001575Not AvailableNegative334645 - 33505215690.3

Displaying genes 341 – 350 of 3969 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

11 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0003276S-(5-deoxy-D-ribos-5-yl)-L-homocysteineC9H17NO6SChemical structure of S-(5-deoxy-D-ribos-5-yl)-L-homocysteine15912-98-8
Average267.299Da
Monoisotopic267.077658Da
BASm0015880N-(3-oxodecanoyl)-L-homoserine lactoneC14H23NO4Chemical structure of N-(3-oxodecanoyl)-L-homoserine lactoneNULL
Average269.341Da
Monoisotopic269.162708225Da
BASm00172855-MethylthioriboseC6H12O4SChemical structure of 5-Methylthioribose23656-67-9
Average180.222Da
Monoisotopic180.045629562Da
BASm00189185'-DeoxyriboseC5H10O4Chemical structure of 5'-DeoxyriboseNULL
Average134.1305Da
Monoisotopic134.057908808Da
BASm0034737(6S)-5,6,7,8-tetrahydrofolic acidC19H23N7O6Chemical structure of (6S)-5,6,7,8-tetrahydrofolic acidNULL
Average445.4292Da
Monoisotopic445.170981503Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0039762Acidaminococcus intestini RyC-MR95Not availableNot availableNot available
BASm0039944Actinobacillus pleuropneumoniaeNot available5118-16-1Not available
BASm0040045Bacillus amyloliquefaciensNot availableNot availableNot available

Displaying 1–10 of 11 metabolites

Health Effects

No health effects information available for this bacterium.