Escherichia coli str. 256

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli str. 256 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain thrives optimally at 37.0°C, which is indicative of its adaptation to warm-blooded hosts, aligning with its habitat as a host-associated microbe. E. coli str. 256 exhibits facultative anaerobic respiration, allowing it to survive in both aerobic and anaerobic environments, a trait that enhances its versatility in various ecological niches within the host. This adaptability may facilitate its role in the gut microbiome, where it can contribute to digestive processes while competing with other microorganisms. E. coli is known for its ability to metabolize a wide range of substrates, which may reflect its evolutionary success in diverse host-associated environments. Understanding the traits of E. coli str. 256 not only contributes to our knowledge of this specific strain but also highlights the ecological complexities of intestinal microbiota, where such bacteria play crucial roles in maintaining host health and influencing metabolic pathways.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strain256

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli str. 256
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain 256 plasmid unnamed1, whole genome shotgun

Gene Summary

Adenine Count

30636 bp

Thymine Count

31739 bp

Guanine Count

27241 bp

Cytosine Count

31147 bp

Genome Length

120763 bp

Protein-coding Genes

146 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
f-type conjugal transfer pilus assembly protein trabBMT53_RS00220Not AvailableNegative33399 - 3482950235.6
type-f conjugative transfer system secretin trakBMT53_RS00225Not AvailableNegative34829 - 3555725689.8
type iv conjugative transfer system protein traeBMT53_RS00230Not AvailableNegative35544 - 3611021299.9
type iv conjugative transfer system protein tralBMT53_RS00235Not AvailableNegative36132 - 3644311960.7
type iv conjugative transfer system pilin traaBMT53_RS00240Not AvailableNegative36458 - 3681112435.8
conjugal transfer relaxosome dna-bindin protein trayBMT53_RS00245Not AvailableNegative36867 - 3724114451.4
conjugal transfer transcriptional regulator trajBMT53_RS00250Not AvailableNegative37340 - 3802927202.6
conjugal transfer relaxosome dna-binding protein tramBMT53_RS00255Not AvailableNegative38214 - 3859714483.3
transglycosylase slt domain-containing proteinBMT53_RS00265Not AvailablePositive38949 - 3953922375.0
duf932 domain-containing proteinBMT53_RS00270Not AvailableNegative39836 - 4065731593.7

Displaying genes 41 – 50 of 5722 in total

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total