Escherichia coli str. CRE1540

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain CRE1540 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain, like many members of the E. coli species, exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. E. coli CRE1540 has an optimal growth temperature of 37.0°C, which aligns with the typical physiological temperature of mammalian hosts, suggesting its adaptation to a host-associated habitat. The facultative anaerobic nature of E. coli CRE1540 indicates its versatility in utilizing oxygen for respiration when available, while also being capable of fermentation processes under anaerobic conditions. This metabolic flexibility is a significant trait that enables the organism to survive in various environments within the host, such as the gastrointestinal tract, where oxygen levels can fluctuate. Understanding the specialized traits of E. coli CRE1540 may provide insights into its role within the microbiome of its host, as well as its interactions with other microbial communities. The ability to grow in pairs or as single cells may reflect adaptive strategies for colonization and resource utilization in dynamic environments, further emphasizing the importance of studying strain-specific characteristics in understanding microbial ecology and physiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainCRE1540

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli str. CRE1540
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain CRE1540 plasmid p1540-3, complete

Gene Summary

Adenine Count

29142 bp

Thymine Count

29860 bp

Guanine Count

28358 bp

Cytosine Count

28668 bp

Genome Length

116028 bp

Protein-coding Genes

20 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-ile;Not AvailableNot AvailablePositive26925 - 27000Not Available
BanBVL39_RS27155Not AvailablePositive27287 - 2865150467.1
DbnBVL39_RS27160Not AvailablePositive28651 - 2964937381.8
Base plate protein gp5BVL39_RS27165Not AvailableNegative29696 - 3032821671.6
Tail length protein gp6BVL39_RS27170Not AvailableNegative30321 - 3133737224.5
Baseplate protein gp24BVL39_RS27175Not AvailableNegative31339 - 3212428914.3
Tail proteinBVL39_RS27180Not AvailableNegative32111 - 3283927147.3
Tail stability protein gp25BVL39_RS27185Not AvailableNegative32843 - 3406045837.7
Base plate protein gp26BVL39_RS27190Not AvailableNegative34070 - 3444714457.5
Putative morphogenetic protein pmglBVL39_RS27195Not AvailablePositive34594 - 348399277.92

Displaying genes 31 – 40 of 414 in total

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total