Pectobacterium carotovorum str. SCC1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium carotovorum str. SCC1 is a Gram-negative bacterium characterized by the presence of true flagella, which facilitate its motility. This strain possesses a single replicon, indicating a streamlined genomic organization. The genome of Pectobacterium carotovorum str. SCC1 is accessible under the accession number NZ_CP021895.1, providing a valuable resource for further genomic studies and analyses. Being a member of the Pectobacterium genus, this strain is likely involved in various interactions within its environment, although specific ecological roles are not detailed in the available data. The presence of flagella suggests that Pectobacterium carotovorum str. SCC1 may exhibit active movement in its habitat, potentially aiding in colonization and interactions with host organisms or other microbial communities. Understanding the traits of this strain can contribute to the broader knowledge of its ecological significance and role in microbial dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium versatile
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Viridiplantae, Solanum tuberosum, Daucus carota
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium versatile strain SCC1 plasmid pSCC1, complete

Gene Summary

Adenine Count

1344 bp

Thymine Count

1372 bp

Guanine Count

1503 bp

Cytosine Count

1305 bp

Genome Length

5524 bp

Protein-coding Genes

10 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
replication initiation proteinSCC1_RS22880Not AvailableNegative237 - 3744962.75
mobc family plasmid mobilization relaxosome proteinSCC1_RS22480Not AvailablePositive1016 - 133911752.2
relaxase/mobilization nuclease domain-containing proteinSCC1_RS22855Not AvailablePositive1548 - 198216258.3
mbeb family mobilization proteinSCC1_RS22620Not AvailablePositive2017 - 250217961.6
mbed family mobilization/exclusion proteinSCC1_RS22625Not AvailablePositive2506 - 27158115.59
hypothetical proteinSCC1_RS22490Not AvailableNegative2929 - 348020638.5
hypothetical proteinSCC1_RS22710Not AvailablePositive3675 - 38335829.03
hypothetical proteinSCC1_RS22500Not AvailablePositive3988 - 456321790.8
hypothetical proteinSCC1_RS22505Not AvailableNegative4692 - 502712599.0
hypothetical proteinSCC1_RS22510Not AvailableNegative5024 - 541014816.7

Displaying genes 1 – 10 of 10 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Soft rotCausesPMC11149725
Potato blacklegCausesPMC11677604
Potato soft rotCausesPMC5376619

Displaying health effects 1 – 3 of 3 in total