Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | A6 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain A6 chromosome circular, complete
Gene Summary
Adenine Count
586686 bp
Thymine Count
578925 bp
Guanine Count
826474 bp
Cytosine Count
840134 bp
Genome Length
2832219 bp
Protein-coding Genes
2634 genes
Non-Coding Genes
111 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| murein l,d-transpeptidase | AtA6_RS03990 | Not Available | Positive | 796461 - 797792 | 49035.4 |
| serine hydroxymethyltransferase | AtA6_RS03995 | Not Available | Positive | 798003 - 799292 | 46548.8 |
| transcriptional regulator nrdr | AtA6_RS04000 | Not Available | Positive | 799305 - 799784 | 18182.6 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | AtA6_RS04005 | Not Available | Positive | 799787 - 800923 | 40708.2 |
| riboflavin synthase | AtA6_RS04010 | Not Available | Positive | 800923 - 801534 | 21999.1 |
| lyse family translocator | AtA6_RS04015 | Not Available | Positive | 801799 - 802431 | 22729.6 |
| 6,7-dimethyl-8-ribityllumazine synthase | AtA6_RS04020 | Not Available | Positive | 802596 - 803042 | 15796.8 |
| transcription antitermination factor nusb | AtA6_RS04025 | Not Available | Positive | 803047 - 803544 | 18254.8 |
| mfs transporter | AtA6_RS04030 | Not Available | Positive | 803566 - 804789 | 42361.1 |
| sodium-translocating pyrophosphatase | AtA6_RS04035 | Not Available | Positive | 805009 - 807147 | 72464.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |

