Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | A6 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain A6 chromosome circular, complete
Gene Summary
Adenine Count
586686 bp
Thymine Count
578925 bp
Guanine Count
826474 bp
Cytosine Count
840134 bp
Genome Length
2832219 bp
Protein-coding Genes
2634 genes
Non-Coding Genes
111 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hcp family type vi secretion system effector | AtA6_RS23230 | Not Available | Positive | 2021342 - 2021818 | 17303.2 |
| rap1a/tai family immunity protein | AtA6_RS23235 | Not Available | Positive | 2021926 - 2022315 | 13803.3 |
| type vi secretion system amidase effector protein tae4 | AtA6_RS23240 | Not Available | Positive | 2022327 - 2022827 | 18278.4 |
| type vi secretion system tip protein tssi/vgrg | AtA6_RS23245 | Not Available | Positive | 2022841 - 2024994 | 79470.4 |
| hypothetical protein | AtA6_RS28960 | Not Available | Positive | 2025003 - 2025467 | 17157.4 |
| hypothetical protein | AtA6_RS23250 | Not Available | Positive | 2025464 - 2026429 | 35721.0 |
| hypothetical protein | AtA6_RS23255 | Not Available | Positive | 2026436 - 2026969 | 19422.3 |
| paar domain-containing protein | AtA6_RS23260 | Not Available | Positive | 2026986 - 2027363 | 12773.0 |
| hypothetical protein | AtA6_RS23265 | Not Available | Positive | 2027365 - 2028582 | 43734.4 |
| hypothetical protein | AtA6_RS23270 | Not Available | Positive | 2028579 - 2029127 | 19075.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |

