Agrobacterium tumefaciens str. A6

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens str. A6 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C. This microbe is classified as an aerobic organism, requiring oxygen for its metabolic processes. A. tumefaciens str. A6 exhibits a versatile habitat, being found in multiple environments, which may include soil and plant-associated niches. The ability of A. tumefaciens to inhabit diverse ecological settings highlights its potential role in various biogeochemical cycles. Its aerobic nature suggests it may participate in aerobic decomposition processes, contributing to nutrient cycling in its habitats. Moreover, A. tumefaciens is well-known for its interactions with plant systems, particularly through its capacity to transfer DNA to host plants, which influences plant cell behavior. This trait emphasizes the bacterium's importance not only in the context of microbial ecology but also in agricultural biotechnology. The ecological implications of A. tumefaciens str. A6 extend beyond its basic traits, as its adaptability to various environments may facilitate its use in bioremediation and sustainable agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
StrainA6

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens str. A6
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens strain A6 chromosome circular, complete

Gene Summary

Adenine Count

586686 bp

Thymine Count

578925 bp

Guanine Count

826474 bp

Cytosine Count

840134 bp

Genome Length

2832219 bp

Protein-coding Genes

2634 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
class i sam-dependent dna methyltransferaseAtA6_RS00630Not AvailablePositive126118 - 12705933804.1
yitt family proteinAtA6_RS00635Not AvailablePositive127194 - 12780522138.7
yitt family proteinAtA6_RS00640Not AvailablePositive127879 - 12852022853.4
carboxymuconolactone decarboxylase family proteinAtA6_RS00645Not AvailableNegative128547 - 12900817110.5
rrf2 family transcriptional regulatorAtA6_RS00650Not AvailableNegative129110 - 12961317460.2
ligase-associated dna damage response dexh box helicaseAtA6_RS00655Not AvailablePositive129664 - 13225595958.1
ligase-associated dna damage response endonuclease pdemAtA6_RS00660Not AvailablePositive132290 - 13301826779.4
universal stress proteinAtA6_RS00665Not AvailableNegative133037 - 13347415795.0
tigr02186 family proteinAtA6_RS00670Not AvailableNegative133635 - 13445929815.0
sulfite exporter taue/safe family proteinAtA6_RS00675Not AvailableNegative134456 - 13538232694.6

Displaying genes 211 – 220 of 5569 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total