Agrobacterium tumefaciens

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens is a Gram-negative, rod-shaped bacterium characterized by its motility, facilitated by the presence of flagella. This organism exhibits a mesophilic temperature classification, with an optimal growth temperature of 25°C, and is classified as an aerobe, indicating its requirement for oxygen during metabolic processes. A. tumefaciens possesses two cellular membranes, which is typical of Gram-negative bacteria, and contains three replicons within its genomic structure, as evidenced by its genome accessions MTKI00000000.1, LXPS00000000.1, and CCAN000000000.1. This bacterium is known for its free-living biotic relationship, thriving in various habitats. Its adaptability to multiple environments showcases its potential ecological versatility. The combination of its motility, metabolic requirements, and genetic makeup contributes to its ability to inhabit diverse ecological niches, further emphasizing its significance in microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens WGS project CCAN000000000 data, strain

Gene Summary

Adenine Count

1219213 bp

Thymine Count

1214018 bp

Guanine Count

1785206 bp

Cytosine Count

1785900 bp

Genome Length

6004337 bp

Protein-coding Genes

5553 genes

Non-Coding Genes

169 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rhomboid family intramembrane serine proteaseA7J57_15635Not AvailableNegative329 - 110228123.9
atp:cob(i)alamin adenosyltransferaseA7J57_15640Not AvailableNegative1134 - 171221050.2
hypothetical proteinA7J57_15645Not AvailableNegative1714 - 19117111.38
short-chain dehydrogenaseA7J57_15650Not AvailableNegative1929 - 276230303.8
hypothetical proteinA7J57_15655Not AvailablePositive2939 - 385633107.9
trna glutamyl-q synthetaseA7J57_15660Not AvailableNegative3824 - 472333782.0
dna-3-methyladenine glycosidaseA7J57_15665Not AvailablePositive4772 - 541923101.1
cro/cl family transcriptional regulatorA7J57_15670Not AvailableNegative5435 - 685352491.0
methylmalonyl-coa carboxyltransferaseA7J57_15675Not AvailablePositive6972 - 850455875.9
glutathione-dependent disulfide-bond oxidoreductaseA7J57_15680Not AvailablePositive8607 - 950332918.9

Displaying genes 1 – 10 of 16171 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Result columns

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Average massMonoisotopic mass
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Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total