Agrobacterium tumefaciens str. CFBP5499

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens str. CFBP5499 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions and exhibits optimal growth at a temperature of 25.0°C. This strain is part of a diverse group of microorganisms found in various habitats, indicating its ecological versatility. Agrobacterium species are well-known for their unique ability to transfer DNA to plant cells, a trait that has significant implications for plant biotechnology and genetic engineering. The presence of A. tumefaciens in multiple habitats suggests its adaptability to different environmental conditions, which may facilitate its interactions with a variety of host plants. This adaptability is critical for its survival and potential applications in agricultural practices. The strain's aerobic nature indicates a reliance on oxygen for metabolic processes, which may influence its distribution in soil and plant-associated environments. Notably, the optimal growth temperature of 25.0°C corresponds with typical environmental conditions found in temperate regions, further supporting its role in plant-associated ecosystems. Understanding the traits of A. tumefaciens str. CFBP5499 offers valuable insights into its ecological interactions and potential utility in biotechnological applications, particularly in developing sustainable agricultural practices. The versatility of this strain highlights its importance in the study of microbial ecology and plant-microbe interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
StrainCFBP5499

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens str. CFBP5499
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens strain CFBP5499 chromosome linear,

Gene Summary

Adenine Count

465823 bp

Thymine Count

469825 bp

Guanine Count

681096 bp

Cytosine Count

684581 bp

Genome Length

2301325 bp

Protein-coding Genes

1963 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcription termination factor rhoCFBP5499_RS13365Not AvailableNegative2624719 - 262598446992.0
protoporphyrinogen oxidase hemjCFBP5499_RS13370Not AvailableNegative2626171 - 262671620400.4
uroporphyrinogen decarboxylaseCFBP5499_RS13375Not AvailableNegative2626713 - 262774737108.8
pyruvate, water dikinase regulatory proteinCFBP5499_RS13385Not AvailablePositive2628156 - 262897730274.4
two-component system response regulator actrCFBP5499_RS13390Not AvailablePositive2629008 - 262960721464.0
shikimate dehydrogenaseCFBP5499_RS13395Not AvailablePositive2629600 - 263046031287.4
dephospho-coa kinaseCFBP5499_RS13400Not AvailablePositive2630460 - 263104121268.9
dna polymerase iii subunit epsilonCFBP5499_RS13405Not AvailablePositive2631062 - 263176025931.9
protein-export chaperone secbCFBP5499_RS13410Not AvailableNegative2631859 - 263234117311.8
fxsa family proteinCFBP5499_RS13415Not AvailableNegative2632445 - 263298119297.9

Displaying genes 4871 – 4880 of 5416 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total