Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | CFBP5499 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain CFBP5499 chromosome linear,
Gene Summary
Adenine Count
465823 bp
Thymine Count
469825 bp
Guanine Count
681096 bp
Cytosine Count
684581 bp
Genome Length
2301325 bp
Protein-coding Genes
1963 genes
Non-Coding Genes
108 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system rata family toxin | CFBP5499_RS06300 | Not Available | Positive | 1203994 - 1204449 | 17542.1 |
| cina family protein | CFBP5499_RS06305 | Not Available | Negative | 1204431 - 1204940 | 17704.4 |
| bifunctional 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase/2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | CFBP5499_RS06310 | Not Available | Negative | 1204937 - 1206124 | 41624.5 |
| trna dihydrouridine synthase dusb | CFBP5499_RS06315 | Not Available | Positive | 1206401 - 1207417 | 36757.2 |
| two-component system sensor histidine kinase ntrb | CFBP5499_RS06320 | Not Available | Positive | 1207414 - 1208562 | 41427.5 |
| nitrogen regulation protein nr(i) | CFBP5499_RS06325 | Not Available | Positive | 1208559 - 1210010 | 53920.1 |
| sensor histidine kinase ntry-like | CFBP5499_RS06330 | Not Available | Positive | 1210161 - 1212422 | 82677.7 |
| sigma-54-dependent transcriptional regulator | CFBP5499_RS06335 | Not Available | Positive | 1212412 - 1213776 | 50426.3 |
| trk system potassium transporter trka | CFBP5499_RS06340 | Not Available | Positive | 1213826 - 1215202 | 50248.7 |
| rna chaperone hfq | CFBP5499_RS06345 | Not Available | Positive | 1215387 - 1215629 | 9073.07 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |

