Agrobacterium tumefaciens str. 1D1609

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens str. 1D1609 is a Gram-negative, rod-shaped bacterium that thrives in a variety of habitats under aerobic conditions. Its optimal growth temperature is approximately 25.0°C, indicating a preference for moderate environmental temperatures. This strain is part of a broader genus known for its ability to interact with plant systems, particularly through mechanisms that facilitate gene transfer. As a member of the Agrobacterium species, str. 1D1609 may possess traits that allow it to utilize diverse organic compounds in its environment, which can be advantageous in varied habitats. The aerobic nature of this bacterium suggests it relies on oxygen for its metabolic processes, a trait that influences its ecological niche and interactions with other microorganisms and plants. Understanding the specific characteristics of Agrobacterium tumefaciens str. 1D1609 can inform its potential applications in biotechnology, particularly in plant genetic engineering. The ability to adapt to multiple habitats and thrive in aerobic conditions may enable this strain to play a significant role in soil ecosystems and plant-microbe interactions, highlighting its importance in ecological dynamics and potentially beneficial biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strain1D1609

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens str. 1D1609
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens strain 1D1609 plasmid pTi1D1609,

Gene Summary

Adenine Count

37209 bp

Thymine Count

37648 bp

Guanine Count

46427 bp

Cytosine Count

44833 bp

Genome Length

166117 bp

Protein-coding Genes

157 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinAt1D1609_RS28315Not AvailableNegative211655 - 21207715616.1
type iv toxin-antitoxin system abiei family antitoxin domain-containing proteinAt1D1609_RS28320Not AvailablePositive212809 - 21365431630.7
nucleotidyl transferase abieii/abigii toxin family proteinAt1D1609_RS28325Not AvailablePositive213644 - 21457935342.4
hypothetical proteinAt1D1609_RS28330Not AvailablePositive214579 - 21543331875.8
type i restriction endonucleaseAt1D1609_RS28335Not AvailablePositive215442 - 21777885470.2
tigr02391 family proteinAt1D1609_RS28340Not AvailablePositive217775 - 21857529774.6
abc-three component system proteinAt1D1609_RS28345Not AvailablePositive218790 - 21995643447.9
three component abc system middle componentAt1D1609_RS28350Not AvailablePositive219953 - 22045918442.6
duf3732 domain-containing proteinAt1D1609_RS28355Not AvailablePositive220459 - 22243874145.5
hypothetical proteinAt1D1609_RS28360Not AvailableNegative222519 - 22385650382.1

Displaying genes 541 – 550 of 2687 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total