Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | 1D1609 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b,
Gene Summary
Adenine Count
39863 bp
Thymine Count
40182 bp
Guanine Count
53569 bp
Cytosine Count
54026 bp
Genome Length
187640 bp
Protein-coding Genes
172 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| plasmid partitioning protein repa | At1D1609_RS26435 | Not Available | Positive | 1 - 1218 | 44552.3 |
| plasmid partitioning protein repb | At1D1609_RS26440 | Not Available | Positive | 1448 - 2458 | 36552.8 |
| plasmid replication protein repc | At1D1609_RS26445 | Not Available | Positive | 2665 - 3984 | 48420.1 |
| age family epimerase/isomerase | At1D1609_RS26450 | Not Available | Negative | 3925 - 4893 | 35422.7 |
| age family epimerase/isomerase | At1D1609_RS30065 | Not Available | Negative | 4884 - 5194 | 11291.4 |
| age family epimerase/isomerase | At1D1609_RS30070 | Not Available | Negative | 5626 - 5898 | 10073.2 |
| site-specific integrase | At1D1609_RS26465 | Not Available | Negative | 6052 - 7134 | 39706.6 |
| type ii toxin-antitoxin system vapc family toxin | At1D1609_RS26470 | Not Available | Negative | 7136 - 7537 | 14852.9 |
| type ii toxin-antitoxin system phd/yefm family antitoxin | At1D1609_RS26475 | Not Available | Negative | 7537 - 7791 | 9429.92 |
| tn3 family transposase | At1D1609_RS26480 | Not Available | Negative | 8094 - 11069 | 111781.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |

