Agrobacterium tumefaciens str. 1D1609

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens str. 1D1609 is a Gram-negative, rod-shaped bacterium that thrives in a variety of habitats under aerobic conditions. Its optimal growth temperature is approximately 25.0°C, indicating a preference for moderate environmental temperatures. This strain is part of a broader genus known for its ability to interact with plant systems, particularly through mechanisms that facilitate gene transfer. As a member of the Agrobacterium species, str. 1D1609 may possess traits that allow it to utilize diverse organic compounds in its environment, which can be advantageous in varied habitats. The aerobic nature of this bacterium suggests it relies on oxygen for its metabolic processes, a trait that influences its ecological niche and interactions with other microorganisms and plants. Understanding the specific characteristics of Agrobacterium tumefaciens str. 1D1609 can inform its potential applications in biotechnology, particularly in plant genetic engineering. The ability to adapt to multiple habitats and thrive in aerobic conditions may enable this strain to play a significant role in soil ecosystems and plant-microbe interactions, highlighting its importance in ecological dynamics and potentially beneficial biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strain1D1609

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens str. 1D1609
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b,

Gene Summary

Adenine Count

39863 bp

Thymine Count

40182 bp

Guanine Count

53569 bp

Cytosine Count

54026 bp

Genome Length

187640 bp

Protein-coding Genes

172 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
plasmid partitioning protein repaAt1D1609_RS26435Not AvailablePositive1 - 121844552.3
plasmid partitioning protein repbAt1D1609_RS26440Not AvailablePositive1448 - 245836552.8
plasmid replication protein repcAt1D1609_RS26445Not AvailablePositive2665 - 398448420.1
age family epimerase/isomeraseAt1D1609_RS26450Not AvailableNegative3925 - 489335422.7
age family epimerase/isomeraseAt1D1609_RS30065Not AvailableNegative4884 - 519411291.4
age family epimerase/isomeraseAt1D1609_RS30070Not AvailableNegative5626 - 589810073.2
site-specific integraseAt1D1609_RS26465Not AvailableNegative6052 - 713439706.6
type ii toxin-antitoxin system vapc family toxinAt1D1609_RS26470Not AvailableNegative7136 - 753714852.9
type ii toxin-antitoxin system phd/yefm family antitoxinAt1D1609_RS26475Not AvailableNegative7537 - 77919429.92
tn3 family transposaseAt1D1609_RS26480Not AvailableNegative8094 - 11069111781.0

Displaying genes 1 – 10 of 2687 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total