Agrobacterium tumefaciens str. 1D1609

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens str. 1D1609 is a Gram-negative, rod-shaped bacterium that thrives in a variety of habitats under aerobic conditions. Its optimal growth temperature is approximately 25.0°C, indicating a preference for moderate environmental temperatures. This strain is part of a broader genus known for its ability to interact with plant systems, particularly through mechanisms that facilitate gene transfer. As a member of the Agrobacterium species, str. 1D1609 may possess traits that allow it to utilize diverse organic compounds in its environment, which can be advantageous in varied habitats. The aerobic nature of this bacterium suggests it relies on oxygen for its metabolic processes, a trait that influences its ecological niche and interactions with other microorganisms and plants. Understanding the specific characteristics of Agrobacterium tumefaciens str. 1D1609 can inform its potential applications in biotechnology, particularly in plant genetic engineering. The ability to adapt to multiple habitats and thrive in aerobic conditions may enable this strain to play a significant role in soil ecosystems and plant-microbe interactions, highlighting its importance in ecological dynamics and potentially beneficial biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strain1D1609

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens str. 1D1609
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens strain 1D1609 plasmid pTi1D1609,

Gene Summary

Adenine Count

37209 bp

Thymine Count

37648 bp

Guanine Count

46427 bp

Cytosine Count

44833 bp

Genome Length

166117 bp

Protein-coding Genes

157 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
winged helix-turn-helix transcriptional regulatorAt1D1609_RS29090Not AvailablePositive138232 - 13860914262.5
glxa family transcriptional regulatorAt1D1609_RS29095Not AvailableNegative138715 - 13968335192.6
cysteine hydrolase family proteinAt1D1609_RS29100Not AvailablePositive139786 - 14032819159.7
mbl fold metallo-hydrolaseAt1D1609_RS29105Not AvailablePositive140451 - 14122427960.4
is66 family transposaseAt1D1609_RS29630Not AvailablePositive141450 - 1417049589.12
rida family proteinAt1D1609_RS29110Not AvailableNegative141851 - 14227915360.5
glxa family transcriptional regulatorAt1D1609_RS29115Not AvailablePositive142444 - 14342136110.5
arsr/smtb family transcription factorAt1D1609_RS29120Not AvailablePositive143671 - 14412016284.5
is3 family transposaseAt1D1609_RS29125Not AvailableNegative144208 - 14543946439.8
hypothetical proteinAt1D1609_RS29870Not AvailablePositive146333 - 1465096525.57

Displaying genes 281 – 290 of 2687 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total