Pseudomonas syringae

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae is a Gram-negative, rod-shaped bacterium characterized by its motility and the presence of true flagella, which aids in its movement. This mesophilic organism is an aerobic heterotroph, indicating it requires oxygen for growth and derives its nutritional energy from organic compounds. Pseudomonas syringae is known to exist as free-living cells, allowing it to inhabit diverse environments. This bacterium possesses a unique cellular structure with two membranes, consistent with its classification within the Proteobacteria phylum. Its genome is complex, containing six replicons, which may contribute to its adaptability in various habitats. The organism is recognized for its role as a plant pathogen, which has implications for agricultural health and crop productivity. Pseudomonas syringae demonstrates a remarkable ecological versatility, thriving in multiple habitats, including soil and plant surfaces. This adaptability may play a crucial role in its interactions within plant ecosystems, particularly in its ability to cause disease and affect plant health. The presence of this bacterium in agricultural settings underscores the importance of understanding its biology and ecology for effective management practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens, Metazoa, Viridiplantae
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityPlant

Genome Summary

Pseudomonas syringae isolate CFBP3840 chromosome 1, complete

Gene Summary

Adenine Count

1259569 bp

Thymine Count

1256323 bp

Guanine Count

1749719 bp

Cytosine Count

1747510 bp

Genome Length

6013125 bp

Protein-coding Genes

5278 genes

Non-Coding Genes

200 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
recombinase family proteinC6H39_RS30485Not AvailablePositive574 - 117021616.0
tn3-like element ispsy30 family transposaseC6H39_RS30490Not AvailablePositive1160 - 4186115370.0
hypothetical proteinC6H39_RS30495Not AvailableNegative4209 - 452912203.7
type ii toxin-antitoxin system hicb family antitoxinC6H39_RS30500Not AvailableNegative4695 - 511715617.0
type ii toxin-antitoxin system hica family toxinC6H39_RS30505Not AvailableNegative5149 - 53316837.34
hypothetical proteinC6H39_RS30510Not AvailablePositive5624 - 590510243.0
is91 family transposaseC6H39_RS30515Not AvailablePositive5907 - 711245887.2
hypothetical proteinC6H39_RS30525Not AvailablePositive7386 - 766710268.0
is91 family transposaseC6H39_RS30530Not AvailablePositive7669 - 887746020.3
mate family efflux transporterC6H39_RS30540Not AvailablePositive9449 - 1082548425.9

Displaying genes 1 – 10 of 5978 in total

Metabolites

114 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0004256(S)-2-hydroxypropylphosphonateC3H8O4PChemical structure of (S)-2-hydroxypropylphosphonateNot available
Average139.067Da
Monoisotopic139.016569316Da
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0012554N-acetyl-beta-D-glucosaminyl-(1->4)-1,6-anhydro-N-acetyl-beta-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioate-D-alanineC37H57N7O20Not availableNot available
Average919.893Da
Monoisotopic919.366934423Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da

Displaying 1–10 of 114 metabolites

Health Effects

Health ConditionRelationReference
ChlorosisCausesPMC3202874
NecrosisCausesPMC3202874
Foliar necroses and cankersCausesPMC6638699
Bacterial cankerCausesPMC8815115
BlightCausesPMC12030312
Plant diseasesCausesPMC3029378
Bacterial cankerCausesPMC4803819
Cherry cankerCausesPMC9305585

Displaying health effects 1 – 8 of 8 in total