Sphingorhabdus lacus IMCC1753

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingorhabdaceae

Genus

Sphingorhabdus

Description

Sphingorhabdus lacus IMCC1753 is a bacterial strain characterized by a single replicon, which is significant for its genetic organization and stability. The genomic data for this strain is accessible under the accession number CP035733.1, providing a foundation for further research and analysis of its genetic makeup. Sphingorhabdus lacus belongs to a genus known for its potential ecological roles, particularly in aquatic environments. The presence of a single replicon may suggest streamlined genetic processes, which can be advantageous in adapting to specific ecological niches. This trait might facilitate efficient replication and maintenance of essential functions, particularly in fluctuating conditions typically found in lake ecosystems. Understanding the genetic and biological characteristics of Sphingorhabdus lacus IMCC1753 can offer insights into its ecological interactions and contributions within its habitat. This strain may play a role in nutrient cycling, influencing the microbial community dynamics in freshwater systems. Furthermore, its genomic characteristics could inform studies on the adaptation mechanisms of bacteria to aquatic environments. As research progresses, Sphingorhabdus lacus IMCC1753 may serve as a model for exploring the ecological significance of bacteria in freshwater habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingorhabdaceae
GenusSphingorhabdus
SpeciesSphingorhabdus lacus
StrainIMCC1753

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingorhabdus lacus IMCC1753, Chromosome

Gene Summary

Adenine Count

750717 bp

Thymine Count

750271 bp

Guanine Count

976518 bp

Cytosine Count

981137 bp

Genome Length

3458743 bp

Protein-coding Genes

3234 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
coa-acylating methylmalonate-semialdehyde dehydrogenaseEUU25_16155Q9I702Positive3390522 - 339201853185.8
3-hydroxyisobutyrate dehydrogenaseEUU25_16160P63936Positive3392024 - 339289329126.8
glucose-1-phosphate thymidylyltransferaseEUU25_16165P61887Negative3392903 - 339376931976.2
dtdp-4-dehydrorhamnose reductaseEUU25_16170P55463Negative3393792 - 339465831398.0
dtdp-glucose 4,6-dehydrataseEUU25_16175P27830Negative3394658 - 339574039902.7
dtdp-4-dehydrorhamnose 3,5-epimeraseEUU25_16180P55468Negative3395737 - 339630621339.3
hypothetical proteinEUU25_16185Q9KCE0Negative3396425 - 339748037739.9
pep-cterm sorting domain-containing proteinEUU25_16190Not AvailableNegative3397582 - 33977044494.65
chromosome partitioning proteinEUU25_16195P71051Negative3398820 - 339960828156.1
lipopolysaccharide biosynthesis proteinEUU25_16200Not AvailableNegative3399628 - 340108852761.3

Displaying genes 3231 – 3240 of 3284 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.