Sphingorhabdus lacus IMCC1753

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingorhabdaceae

Genus

Sphingorhabdus

Description

Sphingorhabdus lacus IMCC1753 is a bacterial strain characterized by a single replicon, which is significant for its genetic organization and stability. The genomic data for this strain is accessible under the accession number CP035733.1, providing a foundation for further research and analysis of its genetic makeup. Sphingorhabdus lacus belongs to a genus known for its potential ecological roles, particularly in aquatic environments. The presence of a single replicon may suggest streamlined genetic processes, which can be advantageous in adapting to specific ecological niches. This trait might facilitate efficient replication and maintenance of essential functions, particularly in fluctuating conditions typically found in lake ecosystems. Understanding the genetic and biological characteristics of Sphingorhabdus lacus IMCC1753 can offer insights into its ecological interactions and contributions within its habitat. This strain may play a role in nutrient cycling, influencing the microbial community dynamics in freshwater systems. Furthermore, its genomic characteristics could inform studies on the adaptation mechanisms of bacteria to aquatic environments. As research progresses, Sphingorhabdus lacus IMCC1753 may serve as a model for exploring the ecological significance of bacteria in freshwater habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingorhabdaceae
GenusSphingorhabdus
SpeciesSphingorhabdus lacus
StrainIMCC1753

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingorhabdus lacus IMCC1753, Chromosome

Gene Summary

Adenine Count

750717 bp

Thymine Count

750271 bp

Guanine Count

976518 bp

Cytosine Count

981137 bp

Genome Length

3458743 bp

Protein-coding Genes

3234 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glutamate-5-semialdehyde dehydrogenaseEUU25_13955Q1GVM0Positive2966411 - 296767643893.6
nicotinate-nucleotide adenylyltransferaseEUU25_13960Q2N6F4Positive2967673 - 296830223897.2
ribosome silencing factorEUU25_13965Q5NLX3Positive2968312 - 296870714274.0
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhEUU25_13970Q1GVM5Positive2968732 - 296915415658.8
metalloendopeptidaseEUU25_13975A0A0H3C9Q9Positive2969159 - 297032542037.9
s41 family peptidaseEUU25_13980Q44879Positive2970440 - 297181649452.4
disulfide bond formation protein bEUU25_13985Q9ZDF9Positive2971820 - 297229917115.9
demethoxyubiquinone hydroxylase family proteinEUU25_13990Q2RNK3Positive2972278 - 297282619605.5
hypothetical proteinEUU25_13995Not AvailablePositive2972889 - 297348221230.8
duf885 domain-containing proteinEUU25_14000Not AvailableNegative2973489 - 297524064452.4

Displaying genes 2791 – 2800 of 3284 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.