Sphingorhabdus lacus IMCC1753

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingorhabdaceae

Genus

Sphingorhabdus

Description

Sphingorhabdus lacus IMCC1753 is a bacterial strain characterized by a single replicon, which is significant for its genetic organization and stability. The genomic data for this strain is accessible under the accession number CP035733.1, providing a foundation for further research and analysis of its genetic makeup. Sphingorhabdus lacus belongs to a genus known for its potential ecological roles, particularly in aquatic environments. The presence of a single replicon may suggest streamlined genetic processes, which can be advantageous in adapting to specific ecological niches. This trait might facilitate efficient replication and maintenance of essential functions, particularly in fluctuating conditions typically found in lake ecosystems. Understanding the genetic and biological characteristics of Sphingorhabdus lacus IMCC1753 can offer insights into its ecological interactions and contributions within its habitat. This strain may play a role in nutrient cycling, influencing the microbial community dynamics in freshwater systems. Furthermore, its genomic characteristics could inform studies on the adaptation mechanisms of bacteria to aquatic environments. As research progresses, Sphingorhabdus lacus IMCC1753 may serve as a model for exploring the ecological significance of bacteria in freshwater habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingorhabdaceae
GenusSphingorhabdus
SpeciesSphingorhabdus lacus
StrainIMCC1753

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingorhabdus lacus IMCC1753, Chromosome

Gene Summary

Adenine Count

750717 bp

Thymine Count

750271 bp

Guanine Count

976518 bp

Cytosine Count

981137 bp

Genome Length

3458743 bp

Protein-coding Genes

3234 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ferrous iron transporter bEUU25_12755Q8F332Positive2705220 - 270707366654.2
single-stranded dna-binding proteinEUU25_12760Q8YHC2Positive2707112 - 270763017929.5
sigma-54-dependent fis family transcriptional regulatorEUU25_12765Q55909Positive2707680 - 270980776327.4
cdp-alcohol phosphatidyltransferase family proteinEUU25_12770P76226Negative2709829 - 271043121067.9
duf177 domain-containing proteinEUU25_12775Not AvailableNegative2710438 - 271096818928.5
ubiquinol-cytochrome c chaperoneEUU25_12780Not AvailableNegative2710962 - 271148619158.3
outer membrane protein assembly factor bameEUU25_12785Not AvailablePositive2711598 - 271207116885.9
nadp-dependent malic enzymeEUU25_12790O30808Negative2712100 - 271436181433.3
dna mismatch repair protein mutsEUU25_12795A5VA00Positive2714493 - 271707291659.0
nupc/nupg family nucleoside cnt transporterEUU25_12800P44742Negative2717080 - 271834543178.1

Displaying genes 2551 – 2560 of 3284 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.