Sphingorhabdus lacus IMCC1753

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingorhabdaceae

Genus

Sphingorhabdus

Description

Sphingorhabdus lacus IMCC1753 is a bacterial strain characterized by a single replicon, which is significant for its genetic organization and stability. The genomic data for this strain is accessible under the accession number CP035733.1, providing a foundation for further research and analysis of its genetic makeup. Sphingorhabdus lacus belongs to a genus known for its potential ecological roles, particularly in aquatic environments. The presence of a single replicon may suggest streamlined genetic processes, which can be advantageous in adapting to specific ecological niches. This trait might facilitate efficient replication and maintenance of essential functions, particularly in fluctuating conditions typically found in lake ecosystems. Understanding the genetic and biological characteristics of Sphingorhabdus lacus IMCC1753 can offer insights into its ecological interactions and contributions within its habitat. This strain may play a role in nutrient cycling, influencing the microbial community dynamics in freshwater systems. Furthermore, its genomic characteristics could inform studies on the adaptation mechanisms of bacteria to aquatic environments. As research progresses, Sphingorhabdus lacus IMCC1753 may serve as a model for exploring the ecological significance of bacteria in freshwater habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingorhabdaceae
GenusSphingorhabdus
SpeciesSphingorhabdus lacus
StrainIMCC1753

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingorhabdus lacus IMCC1753, Chromosome

Gene Summary

Adenine Count

750717 bp

Thymine Count

750271 bp

Guanine Count

976518 bp

Cytosine Count

981137 bp

Genome Length

3458743 bp

Protein-coding Genes

3234 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rod shape-determining proteinEUU25_08305A0A0H3C7V4Positive1751720 - 175276036779.6
rod shape-determining protein mrecEUU25_08310B8H610Positive1752775 - 175367731484.2
rod shape-determining protein mredEUU25_08315Not AvailablePositive1753764 - 175422816931.7
penicillin-binding protein 2EUU25_08320P44469Positive1754225 - 175613269363.6
rod shape-determining protein rodaEUU25_08325P0ABG8Positive1756129 - 175724140037.4
Trna-lysNot AvailableNot AvailablePositive1757331 - 1757406Not Available
tonb-dependent receptorEUU25_08335A1JTG3Negative1757744 - 176039594065.5
tonb-dependent receptorEUU25_08340P46359Negative1760404 - 176300791752.3
twin-arginine translocation pathway signal proteinEUU25_08345P50430Positive1763079 - 176454854237.7
nuclear transport factor 2 family proteinEUU25_08350Not AvailableNegative1764699 - 176506113620.4

Displaying genes 1661 – 1670 of 3284 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.