Roseibium alexandrii DFL-11

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Stappiaceae

Genus

Roseibium

Description

Roseibium alexandrii DFL-11 is a Gram-negative bacterium characterized by its possession of three replicons. This feature indicates a complex genomic structure, which may contribute to its adaptability and potential metabolic versatility. The organism is documented under the accessions CM011002.1, CM011003.1, and CM011004.1, providing a basis for genomic analysis and further research into its biological functions. As a member of the Roseibium genus, R. alexandrii DFL-11 is likely involved in various ecological processes, particularly in aquatic environments. Gram-negative bacteria are known for their diverse roles in nutrient cycling and interaction with other microorganisms, which can influence ecosystem dynamics. The multiple replicons suggest a capacity for rapid genetic adaptation, enabling R. alexandrii DFL-11 to respond to environmental changes effectively. In summary, the structural attributes of Roseibium alexandrii DFL-11, including its Gram-negative status and the presence of three replicons, highlight its potential ecological significance and adaptability. Further investigation into its metabolic pathways and ecological roles could provide insights into its contributions to microbial communities and biogeochemical cycles.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyStappiaceae
GenusRoseibium
SpeciesRoseibium alexandrii
StrainDFL-11

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Roseibium alexandrii DFL-11, Chromosome

Gene Summary

Adenine Count

1143736 bp

Thymine Count

1166550 bp

Guanine Count

1498323 bp

Cytosine Count

1490641 bp

Genome Length

5300354 bp

Protein-coding Genes

4815 genes

Non-Coding Genes

162 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
site-specific recombinase xerdSADFL11_00005590Not AvailablePositive580984 - 58246854869.8
hypothetical proteinSADFL11_4001Not AvailablePositive582468 - 5826717267.62
diguanylate cyclase (ggdef) domain proteinSADFL11_4412Q9KKZ4Positive583113 - 58413837791.7
hypothetical proteinSADFL11_4033Not AvailableNegative584387 - 58469211052.9
diguanylate cyclase (ggdef) domain proteinSADFL11_4921Q9A5I5Negative584934 - 58656560038.9
abc-type amino acid transport/signal transduction systemSADFL11_4801Not AvailableNegative586933 - 58792835761.1
methyl-accepting chemotaxis proteinSADFL11_4041Q9I6V6Positive588038 - 59037783220.4
putative small membrane proteinSADFL11_1012Q4L3Q9Positive590804 - 59119313874.3
methyl-accepting chemotaxis proteinSADFL11_4430O07621Negative591474 - 59281747515.1
pas domain s-box/diguanylate cyclase (ggdef) domain proteinSADFL11_2428Q9ABX9Positive593132 - 59539382596.6

Displaying genes 711 – 720 of 5128 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.