Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis mediterranei |
| Strain | Lepetit ME/83, Lepetit ME83/973, Schering 368 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Filamentous |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Amycolatopsis mediterranei Lepetit ME/83, Lepetit ME83/973, Schering 368, Chromosome
Gene Summary
Adenine Count
1464516 bp
Thymine Count
1458769 bp
Guanine Count
3632108 bp
Cytosine Count
3642717 bp
Genome Length
10606055 bp
Protein-coding Genes
9533 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ISP_002874 | Not Available | Positive | 3012588 - 3012956 | 12949.0 |
| sigma-70 family rna polymerase sigma factor | ISP_002875 | H8EXN1 | Positive | 3012988 - 3013473 | 18008.4 |
| zf-hc2 domain-containing protein | ISP_002876 | H8EXN2 | Positive | 3013470 - 3014129 | 22922.8 |
| chorismate synthase | ISP_002877 | A4FBE6 | Positive | 3014417 - 3015604 | 41868.0 |
| shikimate kinase | ISP_002878 | A4FBE7 | Positive | 3015601 - 3016125 | 17917.4 |
| 3-dehydroquinate synthase | ISP_002879 | A4FBE8 | Positive | 3016134 - 3017243 | 38502.5 |
| type ii 3-dehydroquinate dehydratase | ISP_002880 | A4FBE9 | Positive | 3017240 - 3017671 | 15290.1 |
| gnat family n-acetyltransferase | ISP_002881 | P54557 | Positive | 3017668 - 3018594 | 33206.3 |
| beta-xylosidase | ISP_002882 | Not Available | Positive | 3018862 - 3020343 | 50746.6 |
| b-4dmt family transporter | ISP_002883 | Not Available | Negative | 3020585 - 3021040 | 15711.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
