Amycolatopsis mediterranei Lepetit ME/83, Lepetit ME83/973, Schering 368

Gram-positiveFilamentousNon-motileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Amycolatopsis

Description

Amycolatopsis mediterranei, specifically the strains Lepetit ME/83, Lepetit ME83/973, and Schering 368, are notable for their habitat in soil environments. These microorganisms are characterized as Gram-positive and possess a filamentous shape, which is typical for many members of the Actinobacteria phylum. They are strictly aerobic, requiring oxygen for growth, and they do not exhibit mobility, meaning they do not move independently within their environment. The presence of flagella in these strains is noteworthy, as it is commonly associated with motility; however, in this case, it may play a role in surface attachment or other ecological interactions rather than in locomotion. These strains are classified as mesophilic, indicating they thrive in moderate temperature ranges, which is typical for soil-dwelling microorganisms. Additionally, Amycolatopsis mediterranei has only one replicon, suggesting a relatively simple genetic structure, which may facilitate genetic stability in natural environments. The accession number for this organism is CP100416.1, which provides a reference for genetic studies. In terms of ecological insight, the filamentous structure and aerobic nature of Amycolatopsis mediterranei suggest that these organisms play a significant role in soil ecosystems, potentially contributing to the breakdown of organic materials and nutrient cycling. Their adaptation to soil habitats and mesophilic conditions indicates their importance in maintaining soil health and supporting biodiversity.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusAmycolatopsis
SpeciesAmycolatopsis mediterranei
StrainLepetit ME/83, Lepetit ME83/973, Schering 368

Profile

Physiology
Gram staining propertiesPositive
ShapeFilamentous
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Amycolatopsis mediterranei Lepetit ME/83, Lepetit ME83/973, Schering 368, Chromosome

Gene Summary

Adenine Count

1464516 bp

Thymine Count

1458769 bp

Guanine Count

3632108 bp

Cytosine Count

3642717 bp

Genome Length

10606055 bp

Protein-coding Genes

9533 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thiamine pyrophosphate-binding proteinISP_002764Q9HUI8Negative2898466 - 290010956644.5
agmatinaseISP_002765Q8KZT5Negative2900106 - 290105033737.9
sodium:solute symporterISP_002766Q4L7L6Negative2901043 - 290248850546.5
pucr family transcriptional regulatorISP_002767P49694Positive2902587 - 290408952339.1
response regulator transcription factorISP_002768P0A4I1Positive2904125 - 290480224135.0
hamp domain-containing histidine kinaseISP_002769P0A4I7Positive2904799 - 290592340052.4
alpha/beta hydrolaseISP_002770P95125Negative2906042 - 290714238674.1
php domain-containing proteinISP_002771Not AvailableNegative2907136 - 290867155554.0
hypothetical proteinISP_002772Not AvailablePositive2908742 - 290917015115.4
3-hydroxyacyl-coa dehydrogenase nad-binding domain-containing proteinISP_002773A8GH86Negative2909167 - 291127875213.5

Displaying genes 2771 – 2780 of 9594 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.