Escherichia coli U5/41, U 5/41

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli U5/41 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella, which facilitates motility. This strain thrives optimally at a temperature of 37°C, categorizing it as mesophilic, indicating its preference for moderate temperature ranges typically found in many biological environments, including the human gut. E. coli U5/41 possesses two replicons, which are essential for its genetic stability and replication. This trait is significant as it may contribute to its adaptability and survival in various conditions. The bacterium is classified as free-living, suggesting that it does not rely on a host organism for survival, which indicates its potential ecological versatility. The accessions associated with E. coli U5/41, CP033092.2 and CP033091.2, serve as references for its genomic information, which can provide insights into its genetic makeup and capabilities. Understanding the genetic structure of this strain can help elucidate its role in various environments and its interactions within microbial communities. Overall, the traits of E. coli U5/41 highlight its adaptability and ecological role as a free-living organism in mesophilic environments, which could influence nutrient cycling and microbial dynamics in its habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainU5/41, U 5/41

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Escherichia coli U5/41, U 5/41
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature37
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli U5/41, U 5/41, Complete Genome

Gene Summary

Adenine Count

1209502 bp

Thymine Count

1208921 bp

Guanine Count

1244961 bp

Cytosine Count

1240117 bp

Genome Length

4903501 bp

Protein-coding Genes

4478 genes

Non-Coding Genes

383 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein sanaEAS44_25190P0AFY4Negative1788041 - 178876027288.5
cytidine deaminaseEAS44_25195B7UFF9Negative1788910 - 178979431568.6
cidb/lrgb family autolysis modulatorEAS44_25200P0AD19Negative1789924 - 179061924471.1
hypothetical proteinEAS44_25205B7UFF7Negative1790616 - 179101414579.6
trna dihydrouridine(16) synthase duscEAS44_25210Q8FFV5Positive1791253 - 179220335357.7
protein yohpEAS44_25220C1P609Negative1792591 - 17926743092.28
multidrug resistance outer membrane protein mdtqEAS44_25225Q8FFV6Positive1792808 - 179433455717.5
sdr family oxidoreductaseEAS44_25230P33368Positive1794387 - 179514827023.6
deda family proteinEAS44_25235P33366Negative1795268 - 179584621461.9
yip1 family proteinEAS44_25240P0AD18Positive1796016 - 179660321692.0

Displaying genes 1941 – 1950 of 5021 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4617 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4617 metabolites

Health Effects

No health effects information available for this bacterium.