Desulfonema limicola 5ac10, Jadebusen

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfobacteria

Order

Desulfobacterales

Family

Desulfococcaceae

Genus

Desulfonema

Description

Desulfonema limicola 5ac10, a member of the Desulfonema genus, is notable for its single replicon structure, which is characteristic of certain prokaryotic organisms. This bacterium has been identified in the Jadebusen region, an area known for its unique environmental conditions. The specific accession number for this strain is CP061799.1, which provides a reference for genomic data relevant to its classification and study. The presence of a single replicon in Desulfonema limicola 5ac10 suggests a streamlined genomic organization, which may confer advantages in certain ecological niches. Such organisms often exhibit adaptations that allow them to thrive in specific environments, such as those rich in sulfide or other sulfur compounds, reflecting their role in biogeochemical cycles. In terms of ecological significance, members of the Desulfonema genus are often involved in the process of sulfate reduction, contributing to the cycling of sulfur in their habitats. This process is vital for maintaining the balance of sulfur compounds in aquatic ecosystems, particularly in sediment-rich environments like Jadebusen. Understanding the traits and ecological functions of Desulfonema limicola 5ac10 can provide insights into the microbial dynamics of sulfide-rich environments and their impact on overall ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfobacteria
OrderDesulfobacterales
FamilyDesulfococcaceae
GenusDesulfonema
SpeciesDesulfonema limicola
Strain5ac10, Jadebusen

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Desulfonema limicola 5ac10, Jadebusen, Complete Genome

Gene Summary

Adenine Count

2123510 bp

Thymine Count

2127858 bp

Guanine Count

1335664 bp

Cytosine Count

1321013 bp

Genome Length

6908045 bp

Protein-coding Genes

6197 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysine--trna ligasednl_43040A5D5Q4Negative4602904 - 460438256334.8
dna mismatch repair proteindnl_43050C0QFS1Positive4604656 - 460727198638.6
n-acetylmuramoyl-l-alanine amidase catalytic domain-containing proteindnl_43060P63884Positive4607276 - 460915971418.7
rna-binding crm domain-containing proteindnl_43070P71376Negative4609171 - 460947911703.6
molybdopterin molybdenumtransferasednl_43080Q58296Positive4609675 - 461090444081.7
abc-type transport auxiliary lipoprotein component domain-containing proteindnl_43090Not AvailableNegative4610928 - 461153622780.1
mlad protein domain-containing proteindnl_43100P43671Negative4611538 - 461255437053.9
putative abc transport system, atp-binding proteindnl_43110P63358Negative4612593 - 461335127892.8
putative abc transport system, permease protein, mlae-likednl_43120Q92JD8Negative4613356 - 461450140606.7
putative zinc abc transporter, substrate-binding proteindnl_43130O34966Positive4614712 - 461562334577.1

Displaying genes 4181 – 4190 of 6277 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.