Desulfonema limicola 5ac10, Jadebusen

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfobacteria

Order

Desulfobacterales

Family

Desulfococcaceae

Genus

Desulfonema

Description

Desulfonema limicola 5ac10, a member of the Desulfonema genus, is notable for its single replicon structure, which is characteristic of certain prokaryotic organisms. This bacterium has been identified in the Jadebusen region, an area known for its unique environmental conditions. The specific accession number for this strain is CP061799.1, which provides a reference for genomic data relevant to its classification and study. The presence of a single replicon in Desulfonema limicola 5ac10 suggests a streamlined genomic organization, which may confer advantages in certain ecological niches. Such organisms often exhibit adaptations that allow them to thrive in specific environments, such as those rich in sulfide or other sulfur compounds, reflecting their role in biogeochemical cycles. In terms of ecological significance, members of the Desulfonema genus are often involved in the process of sulfate reduction, contributing to the cycling of sulfur in their habitats. This process is vital for maintaining the balance of sulfur compounds in aquatic ecosystems, particularly in sediment-rich environments like Jadebusen. Understanding the traits and ecological functions of Desulfonema limicola 5ac10 can provide insights into the microbial dynamics of sulfide-rich environments and their impact on overall ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfobacteria
OrderDesulfobacterales
FamilyDesulfococcaceae
GenusDesulfonema
SpeciesDesulfonema limicola
Strain5ac10, Jadebusen

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Desulfonema limicola 5ac10, Jadebusen, Complete Genome

Gene Summary

Adenine Count

2123510 bp

Thymine Count

2127858 bp

Guanine Count

1335664 bp

Cytosine Count

1321013 bp

Genome Length

6908045 bp

Protein-coding Genes

6197 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
anti-sigma-b factor antagonistdnl_15110Q9X1F5Negative1610756 - 161109412534.9
abc-type lipopolysaccharide export system, permease proteindnl_15120P45332Negative1611110 - 161219841823.9
pep/pyruvate binding domain-containing proteindnl_15130O34796Negative1612198 - 1615164112976.0
lytic transglycosylase family proteindnl_15140P0AEZ8Negative1615178 - 161629042871.8
coenzyme pqq synthesis protein domain-containing proteindnl_15150Not AvailablePositive1616463 - 161676811651.0
synchlormet cassette radical sam/spasm proteindnl_15180Q46CH7Positive1617900 - 161896438949.7
uncharacterized proteindnl_15190Not AvailablePositive1618992 - 16192528514.03
synchlormet cassette proteindnl_15200Not AvailablePositive1619255 - 162008230761.8
signal peptidase s26 domain-containing proteindnl_15210C5M4J6Positive1620063 - 162047615762.4
uncharacterized proteindnl_15220Not AvailablePositive1620554 - 16207246807.56

Displaying genes 1471 – 1480 of 6277 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.