Hymenobacter yonginensis HMD1010

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter yonginensis HMD1010 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses two replicons, which are distinct segments of its genetic material, as evidenced by its accession numbers CP115396.1 and CP115397.1. The dual replicon structure may provide advantages in genetic stability and adaptability, potentially influencing its ecological niche and metabolic capabilities. While the specific ecological role of Hymenobacter yonginensis HMD1010 is not detailed, the Hymenobacter genus is typically associated with diverse environments, including soil and aquatic systems, suggesting it may contribute to microbial communities in these habitats. The Gram-negative classification indicates the presence of an outer membrane that can serve as a barrier to certain antibiotics, which is a notable characteristic within microbial ecology and antibiotic resistance studies. Understanding the traits of Hymenobacter yonginensis HMD1010 may offer insights into its potential interactions within its ecosystem, including nutrient cycling and its role in maintaining microbial diversity.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter yonginensis
StrainHMD1010

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter yonginensis HMD1010, Complete Genome

Gene Summary

Adenine Count

889182 bp

Thymine Count

888820 bp

Guanine Count

1450762 bp

Cytosine Count

1452599 bp

Genome Length

4681363 bp

Protein-coding Genes

3938 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cytochrome cO9Z63_04405Not AvailablePositive1011052 - 101157618468.3
helix-turn-helix domain-containing proteinO9Z63_04410Not AvailablePositive1011644 - 10119019689.41
abc transporter permeaseO9Z63_04415P42063Positive1011904 - 101309742515.3
pp2c family protein-serine/threonine phosphataseO9Z63_04420P37979Positive1013203 - 101443845407.8
class i sam-dependent methyltransferaseO9Z63_04425Q9PAM5Negative1014561 - 101537631648.8
o-antigen ligase family proteinO9Z63_04430Not AvailableNegative1015539 - 101699354123.1
hypothetical proteinO9Z63_04435Not AvailableNegative1017081 - 101814839596.3
polysaccharide biosynthesis c-terminal domain-containing proteinO9Z63_04440Q58770Positive1018467 - 101985851483.9
glycosyltransferase family 1 proteinO9Z63_04445P26402Positive1020078 - 102120841775.2
polysaccharide deacetylase family proteinO9Z63_04450Q81EK9Positive1021363 - 102200124269.2

Displaying genes 881 – 890 of 4214 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.