Hymenobacter yonginensis HMD1010

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter yonginensis HMD1010 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses two replicons, which are distinct segments of its genetic material, as evidenced by its accession numbers CP115396.1 and CP115397.1. The dual replicon structure may provide advantages in genetic stability and adaptability, potentially influencing its ecological niche and metabolic capabilities. While the specific ecological role of Hymenobacter yonginensis HMD1010 is not detailed, the Hymenobacter genus is typically associated with diverse environments, including soil and aquatic systems, suggesting it may contribute to microbial communities in these habitats. The Gram-negative classification indicates the presence of an outer membrane that can serve as a barrier to certain antibiotics, which is a notable characteristic within microbial ecology and antibiotic resistance studies. Understanding the traits of Hymenobacter yonginensis HMD1010 may offer insights into its potential interactions within its ecosystem, including nutrient cycling and its role in maintaining microbial diversity.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter yonginensis
StrainHMD1010

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter yonginensis HMD1010, Complete Genome

Gene Summary

Adenine Count

889182 bp

Thymine Count

888820 bp

Guanine Count

1450762 bp

Cytosine Count

1452599 bp

Genome Length

4681363 bp

Protein-coding Genes

3938 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lipoprotein signal peptidaseO9Z63_17295B3EU56Positive4014610 - 401527824604.2
hypothetical proteinO9Z63_17300Not AvailablePositive4015371 - 401608726191.3
abc transporter atp-binding proteinO9Z63_17305Q6D3A9Positive4016333 - 401836674017.0
ribonuclease rO9Z63_17310O32231Positive4018774 - 402127894420.9
polyprenyl synthetase family proteinO9Z63_17315Q8PW34Positive4021494 - 402246536088.4
rhomboid family intramembrane serine proteaseO9Z63_17320O14364Positive4022768 - 402342124202.6
pld nuclease n-terminal domain-containing proteinO9Z63_17325Q57994Positive4023513 - 402378810082.7
duf2939 domain-containing proteinO9Z63_17330Not AvailableNegative4023865 - 402448822618.5
glycerophosphodiester phosphodiesterase family proteinO9Z63_17335O07592Positive4024608 - 402547131371.2
hypothetical proteinO9Z63_17340Not AvailablePositive4025748 - 402618516486.0

Displaying genes 3461 – 3470 of 4214 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.