Hymenobacter yonginensis HMD1010

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter yonginensis HMD1010 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses two replicons, which are distinct segments of its genetic material, as evidenced by its accession numbers CP115396.1 and CP115397.1. The dual replicon structure may provide advantages in genetic stability and adaptability, potentially influencing its ecological niche and metabolic capabilities. While the specific ecological role of Hymenobacter yonginensis HMD1010 is not detailed, the Hymenobacter genus is typically associated with diverse environments, including soil and aquatic systems, suggesting it may contribute to microbial communities in these habitats. The Gram-negative classification indicates the presence of an outer membrane that can serve as a barrier to certain antibiotics, which is a notable characteristic within microbial ecology and antibiotic resistance studies. Understanding the traits of Hymenobacter yonginensis HMD1010 may offer insights into its potential interactions within its ecosystem, including nutrient cycling and its role in maintaining microbial diversity.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter yonginensis
StrainHMD1010

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter yonginensis HMD1010, Complete Genome

Gene Summary

Adenine Count

889182 bp

Thymine Count

888820 bp

Guanine Count

1450762 bp

Cytosine Count

1452599 bp

Genome Length

4681363 bp

Protein-coding Genes

3938 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
m20/m25/m40 family metallo-hydrolaseO9Z63_14995P25152Negative3456917 - 345829050017.1
vanz family proteinO9Z63_15000Not AvailableNegative3458315 - 345874315456.2
glycine cleavage system protein gcvhO9Z63_15005A6LGR3Negative3458736 - 345911613719.0
cell surface protein spraO9Z63_15010Not AvailableNegative3459279 - 3466802281676.0
holliday junction branch migration protein ruvaO9Z63_15015Q11Z44Negative3466958 - 346756321902.6
nadp-dependent malic enzymeO9Z63_15020P76558Negative3467835 - 347011482625.0
hypothetical proteinO9Z63_15025Not AvailableNegative3470289 - 347088821551.2
ydei/ompd-associated family proteinO9Z63_15030Not AvailablePositive3471046 - 347152817275.0
tonb-dependent receptor plug domain-containing proteinO9Z63_15035T2KMI3Negative3471542 - 347407090552.9
tonb-dependent receptor plug domain-containing proteinO9Z63_15040T2KMI3Negative3474284 - 347683391971.2

Displaying genes 3001 – 3010 of 4214 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.