Hymenobacter yonginensis HMD1010

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter yonginensis HMD1010 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses two replicons, which are distinct segments of its genetic material, as evidenced by its accession numbers CP115396.1 and CP115397.1. The dual replicon structure may provide advantages in genetic stability and adaptability, potentially influencing its ecological niche and metabolic capabilities. While the specific ecological role of Hymenobacter yonginensis HMD1010 is not detailed, the Hymenobacter genus is typically associated with diverse environments, including soil and aquatic systems, suggesting it may contribute to microbial communities in these habitats. The Gram-negative classification indicates the presence of an outer membrane that can serve as a barrier to certain antibiotics, which is a notable characteristic within microbial ecology and antibiotic resistance studies. Understanding the traits of Hymenobacter yonginensis HMD1010 may offer insights into its potential interactions within its ecosystem, including nutrient cycling and its role in maintaining microbial diversity.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter yonginensis
StrainHMD1010

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter yonginensis HMD1010, Complete Genome

Gene Summary

Adenine Count

889182 bp

Thymine Count

888820 bp

Guanine Count

1450762 bp

Cytosine Count

1452599 bp

Genome Length

4681363 bp

Protein-coding Genes

3938 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ctp synthaseO9Z63_11650Q11S24Positive2687360 - 268900360693.0
membrane protein insertase yidcO9Z63_11655B3ER28Positive2689259 - 269115470032.1
duf6438 domain-containing proteinO9Z63_11660Not AvailablePositive2691294 - 269181818500.3
abc transporter substrate-binding proteinO9Z63_11665P26906Negative2692024 - 269369763232.1
metal-dependent hydrolaseO9Z63_11670A5FG55Positive2693783 - 269446324058.8
aaa family atpaseO9Z63_11675Q9K5N0Positive2694565 - 269537429221.3
parb/repb/spo0j family partition proteinO9Z63_11680P0A151Positive2695676 - 269664135552.9
duf5683 domain-containing proteinO9Z63_11685Not AvailablePositive2696652 - 269731123623.2
4-hydroxy-tetrahydrodipicolinate reductaseO9Z63_11690A0LZI4Positive2697419 - 269813826263.2
signal peptidase iO9Z63_11695Q8K9R0Positive2698271 - 269945544829.2

Displaying genes 2331 – 2340 of 4214 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.