Hymenobacter yonginensis HMD1010

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter yonginensis HMD1010 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses two replicons, which are distinct segments of its genetic material, as evidenced by its accession numbers CP115396.1 and CP115397.1. The dual replicon structure may provide advantages in genetic stability and adaptability, potentially influencing its ecological niche and metabolic capabilities. While the specific ecological role of Hymenobacter yonginensis HMD1010 is not detailed, the Hymenobacter genus is typically associated with diverse environments, including soil and aquatic systems, suggesting it may contribute to microbial communities in these habitats. The Gram-negative classification indicates the presence of an outer membrane that can serve as a barrier to certain antibiotics, which is a notable characteristic within microbial ecology and antibiotic resistance studies. Understanding the traits of Hymenobacter yonginensis HMD1010 may offer insights into its potential interactions within its ecosystem, including nutrient cycling and its role in maintaining microbial diversity.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter yonginensis
StrainHMD1010

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter yonginensis HMD1010, Complete Genome

Gene Summary

Adenine Count

889182 bp

Thymine Count

888820 bp

Guanine Count

1450762 bp

Cytosine Count

1452599 bp

Genome Length

4681363 bp

Protein-coding Genes

3938 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thioredoxin family proteinO9Z63_05805P29447Positive1351747 - 135210313834.7
gnat family proteinO9Z63_05810O34569Positive1352302 - 135282619789.8
ydcf family proteinO9Z63_05815P0AB02Positive1352903 - 135367028386.9
nad-dependent succinate-semialdehyde dehydrogenaseO9Z63_05820Q55585Negative1353818 - 135522151187.7
sigma-70 family rna polymerase sigma factorO9Z63_05825Q7U1Z6Positive1355438 - 135600121284.6
anti-sigma factorO9Z63_05830A1TEV1Positive1356004 - 135694833054.3
heme no-binding domain-containing proteinO9Z63_05835Q8INF0Positive1357076 - 135762420986.0
arsenosugar biosynthesis-associated peroxidase-like proteinO9Z63_05840P08304Positive1357690 - 135802812258.7
arsenosugar biosynthesis radical sam protein arssO9Z63_05845A0PM49Positive1358156 - 135920538250.0
rhodanese-like domain-containing proteinO9Z63_05850B1JE10Positive1359248 - 135981121468.8

Displaying genes 1161 – 1170 of 4214 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.