Treponema ruminis Ru1

Gram-negativeSpirilla

Kingdom

Pseudomonadati

Phylum

Spirochaetota

Class

Spirochaetia

Order

Treponematales

Family

Treponemataceae

Genus

Treponema

Description

Treponema ruminis Ru1 is a Gram-negative bacterium characterized by its spirilla shape and the presence of flagella, which contribute to its motility. It is noteworthy for having a single replicon, indicating a streamlined genomic structure. The organism is cataloged under the accession number CP031518.1, which provides a reference for genomic studies related to this species. As a member of the Treponema genus, T. ruminis Ru1 is likely involved in the complex microbial ecosystems found in the digestive systems of ruminants. The presence of flagella suggests an adaptation that may facilitate its movement within the gastrointestinal tract, allowing it to colonize specific niches effectively. This motility can be crucial for its role in fermentation processes, where it may contribute to the breakdown of fibrous plant materials. The ecological significance of Treponema ruminis Ru1 lies in its potential involvement in the digestion of cellulose and other carbohydrates in ruminants, thus playing a vital role in nutrient cycling and energy production within these animals. Understanding its characteristics can provide insights into the microbial dynamics of the ruminant gut and the overall health and productivity of livestock.

Taxonomy

KingdomPseudomonadati
PhylumSpirochaetota
ClassSpirochaetia
OrderTreponematales
FamilyTreponemataceae
GenusTreponema
SpeciesTreponema ruminis
StrainRu1

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Treponema ruminis Ru1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Treponema ruminis Ru1, Complete Genome

Gene Summary

Adenine Count

801950 bp

Thymine Count

801060 bp

Guanine Count

651183 bp

Cytosine Count

641389 bp

Genome Length

2895582 bp

Protein-coding Genes

2454 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Tmrna,resume consensus sequence (at 79): aataactgcaattttcgaNot AvailableNot AvailablePositive893375 - 893754Not Available
glycoside hydrolase family 16 proteinDYE50_03870P45798Negative893794 - 89463632094.4
ggdef domain-containing proteinDYE50_03875P24222Positive894718 - 89609752708.8
aminopeptidaseDYE50_03880Q97K30Positive896445 - 89779448678.0
atp-dependent clp protease atp-binding subunit clpxDYE50_03885Q73M37Negative897830 - 89908945963.8
atp-dependent clp endopeptidase proteolytic subunit clppDYE50_03890Q73M38Negative899089 - 89970022443.1
trigger factorDYE50_03895Q73M39Negative899837 - 90120451981.8
Trna-glyNot AvailableNot AvailablePositive901267 - 901341Not Available
Trna-glyNot AvailableNot AvailablePositive901408 - 901482Not Available
Trna-leuNot AvailableNot AvailablePositive901504 - 901583Not Available

Displaying genes 771 – 780 of 2525 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.