Treponema ruminis Ru1

Gram-negativeSpirilla

Kingdom

Pseudomonadati

Phylum

Spirochaetota

Class

Spirochaetia

Order

Treponematales

Family

Treponemataceae

Genus

Treponema

Description

Treponema ruminis Ru1 is a Gram-negative bacterium characterized by its spirilla shape and the presence of flagella, which contribute to its motility. It is noteworthy for having a single replicon, indicating a streamlined genomic structure. The organism is cataloged under the accession number CP031518.1, which provides a reference for genomic studies related to this species. As a member of the Treponema genus, T. ruminis Ru1 is likely involved in the complex microbial ecosystems found in the digestive systems of ruminants. The presence of flagella suggests an adaptation that may facilitate its movement within the gastrointestinal tract, allowing it to colonize specific niches effectively. This motility can be crucial for its role in fermentation processes, where it may contribute to the breakdown of fibrous plant materials. The ecological significance of Treponema ruminis Ru1 lies in its potential involvement in the digestion of cellulose and other carbohydrates in ruminants, thus playing a vital role in nutrient cycling and energy production within these animals. Understanding its characteristics can provide insights into the microbial dynamics of the ruminant gut and the overall health and productivity of livestock.

Taxonomy

KingdomPseudomonadati
PhylumSpirochaetota
ClassSpirochaetia
OrderTreponematales
FamilyTreponemataceae
GenusTreponema
SpeciesTreponema ruminis
StrainRu1

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Treponema ruminis Ru1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Treponema ruminis Ru1, Complete Genome

Gene Summary

Adenine Count

801950 bp

Thymine Count

801060 bp

Guanine Count

651183 bp

Cytosine Count

641389 bp

Genome Length

2895582 bp

Protein-coding Genes

2454 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
class ii fructose-bisphosphate aldolaseDYE50_12010P77704Negative2764066 - 276498332925.1
murr/rpir family transcriptional regulatorDYE50_12015Q45581Negative2765000 - 276586330869.0
abc transporter substrate-binding proteinDYE50_12020Not AvailablePositive2766056 - 276718641415.0
iron abc transporter permeaseDYE50_12025Q44123Positive2767337 - 276906463723.5
abc transporter atp-binding proteinDYE50_12030Q9YGA6Positive2769067 - 277017940987.0
hypothetical proteinDYE50_12035Not AvailablePositive2770227 - 277050210255.4
alpha/beta hydrolaseDYE50_12040A0A0K2VM55Negative2770575 - 277171142687.7
response regulatorDYE50_12045Q5HKE0Negative2771701 - 277251030585.6
hypothetical proteinDYE50_12050O31516Negative2772503 - 277417362405.1
carbohydrate abc transporter permeaseDYE50_12055O34518Negative2774170 - 277500631444.6

Displaying genes 2401 – 2410 of 2525 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.