Shewanella dokdonensis UDC329

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella dokdonensis UDC329 is a notable bacterium characterized by the presence of flagella, which suggests a capability for motility. This trait may facilitate its adaptation to various environments, enhancing its ecological versatility. The strain has a single replicon, indicating a streamlined genomic organization that is common among certain bacterial species, potentially reflecting a specialization in its ecological niche. The genomic information for Shewanella dokdonensis UDC329 is cataloged under the accession number CP074572.1, which provides a reference for researchers interested in further genetic and functional studies of this organism. The presence of flagella is particularly significant, as it may play a crucial role in the bacterium's ability to navigate its surroundings, search for nutrients, or evade competitors and predators in its habitat. In an ecological context, the motility conferred by flagella could allow Shewanella dokdonensis UDC329 to thrive in diverse aquatic environments where it might encounter varying levels of organic matter and different microbial communities. This motility is essential for its interactions within the ecosystem, potentially influencing nutrient cycling and microbial dynamics. Overall, the traits of Shewanella dokdonensis UDC329 underscore its potential ecological roles, particularly in environments where mobility and adaptability are essential for survival and competition.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella dokdonensis
StrainUDC329

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella dokdonensis UDC329, Complete Genome

Gene Summary

Adenine Count

1056423 bp

Thymine Count

1047157 bp

Guanine Count

1010596 bp

Cytosine Count

1013230 bp

Genome Length

4127406 bp

Protein-coding Genes

3774 genes

Non-Coding Genes

221 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf4426 domain-containing proteinKHX94_04210Not AvailablePositive883687 - 88411816618.1
rdgb/ham1 family non-canonical purine ntp pyrophosphataseKHX94_04215Q8EBY7Positive884156 - 88478822606.8
radical sam family heme chaperone hemwKHX94_04220P43899Positive884788 - 88592142444.5
lysr family transcriptional regulatorKHX94_04225P52689Negative886035 - 88697634769.3
yggn family proteinKHX94_04230Not AvailableNegative887255 - 88804629211.1
duf469 family proteinKHX94_04235P38521Negative888280 - 88860312692.9
trna (guanosine(46)-n7)-methyltransferase trmbKHX94_04240A0KUE8Negative888626 - 88934226974.3
phage late control d family proteinKHX94_04245P46230Positive889510 - 89060941647.9
oxidative damage protection proteinKHX94_04250A8H1J7Positive890617 - 89089810942.1
hypothetical proteinKHX94_04255Not AvailableNegative891256 - 89187023017.5

Displaying genes 951 – 960 of 3995 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.