Shewanella dokdonensis UDC329

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella dokdonensis UDC329 is a notable bacterium characterized by the presence of flagella, which suggests a capability for motility. This trait may facilitate its adaptation to various environments, enhancing its ecological versatility. The strain has a single replicon, indicating a streamlined genomic organization that is common among certain bacterial species, potentially reflecting a specialization in its ecological niche. The genomic information for Shewanella dokdonensis UDC329 is cataloged under the accession number CP074572.1, which provides a reference for researchers interested in further genetic and functional studies of this organism. The presence of flagella is particularly significant, as it may play a crucial role in the bacterium's ability to navigate its surroundings, search for nutrients, or evade competitors and predators in its habitat. In an ecological context, the motility conferred by flagella could allow Shewanella dokdonensis UDC329 to thrive in diverse aquatic environments where it might encounter varying levels of organic matter and different microbial communities. This motility is essential for its interactions within the ecosystem, potentially influencing nutrient cycling and microbial dynamics. Overall, the traits of Shewanella dokdonensis UDC329 underscore its potential ecological roles, particularly in environments where mobility and adaptability are essential for survival and competition.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella dokdonensis
StrainUDC329

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella dokdonensis UDC329, Complete Genome

Gene Summary

Adenine Count

1056423 bp

Thymine Count

1047157 bp

Guanine Count

1010596 bp

Cytosine Count

1013230 bp

Genome Length

4127406 bp

Protein-coding Genes

3774 genes

Non-Coding Genes

221 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
yqge/algh family proteinKHX94_04160A8FSM5Positive876063 - 87662320775.7
holliday junction resolvase ruvxKHX94_04165Q8EBZ8Positive876620 - 87706316081.5
glutathione peroxidaseKHX94_04170O08368Negative877073 - 87763320547.6
hypothetical proteinKHX94_04175Not AvailableNegative877700 - 87879741183.4
pilt/pilu family type 4a pilus atpaseKHX94_04180G3XCX3Negative878920 - 88003240985.5
type iv pilus twitching motility protein piltKHX94_04185P24559Negative880042 - 88107938359.4
phage late control d family proteinKHX94_04190P67082Positive881117 - 88182324767.6
pyrroline-5-carboxylate reductaseKHX94_04195P52053Positive881919 - 88274329189.4
yggt family proteinKHX94_04200P52059Positive882769 - 88331720224.8
yggu family proteinKHX94_04205A1RHL9Positive883317 - 88360410594.1

Displaying genes 941 – 950 of 3995 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.