Methanolobus zinderi SD-1

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanomicrobia

Order

Methanosarcinales

Family

Methanosarcinaceae

Genus

Methanolobus

Description

Methanolobus zinderi SD-1 is a notable archaeal species characterized by a single replicon, which is indicative of its genomic organization. The complete genome of this organism is accessible under the accession number CP058215.1. This information is crucial for researchers who study archaeal genomics and the metabolic pathways of methanogens. As a methanogen, Methanolobus zinderi SD-1 plays a significant role in the carbon cycle, particularly in anaerobic environments where it contributes to methane production. Methanogens like M. zinderi are known to utilize methanol or other one-carbon compounds as substrates for growth, ultimately producing methane as a metabolic byproduct. This process is essential for energy flow in various ecosystems, particularly in wetlands and other anaerobic habitats. The presence of a single replicon suggests a streamlined genome, which may facilitate efficient replication and maintenance of essential genes required for its methanogenic lifestyle. This genomic simplicity is often seen in extremophiles and organisms adapted to specific ecological niches. In summary, Methanolobus zinderi SD-1, with its single replicon and accessible genomic data, provides critical insights into archaeal biology and the ecological roles of methanogens in carbon cycling. Understanding its genome can further elucidate the mechanisms underlying methane production and its implications for global carbon dynamics.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanomicrobia
OrderMethanosarcinales
FamilyMethanosarcinaceae
GenusMethanolobus
SpeciesMethanolobus zinderi
StrainSD-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrumen
Biotic relationshipNot Available
Host(s)Ovis aries
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Methanolobus zinderi SD-1, Complete Genome

Gene Summary

Adenine Count

757865 bp

Thymine Count

755220 bp

Guanine Count

591328 bp

Cytosine Count

600540 bp

Genome Length

2704953 bp

Protein-coding Genes

2632 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thioredoxinHWN40_02155P37395Positive431789 - 43218114660.0
methanogenesis marker 14 proteinHWN40_02160Q58846Positive432191 - 43361550847.8
dna polymerase/3'-5' exonuclease polxHWN40_02165P94544Negative433991 - 43571565226.4
duf166 domain-containing proteinHWN40_02170Q57995Negative435745 - 43641924349.4
dtmp kinaseHWN40_02175Q12VF9Positive436712 - 43732322626.6
pas domain s-box proteinHWN40_02180Q8THF6Positive437491 - 43970783293.4
hypothetical proteinHWN40_02185Not AvailableNegative439719 - 4399528706.2
phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomeraseHWN40_02190Q58114Negative439986 - 44069325875.1
(5-formylfuran-3-yl)methyl phosphate synthaseHWN40_02195Q46DH3Positive440738 - 44143624930.1
cdc48 family aaa atpaseHWN40_02200O28972Positive441538 - 44377882381.0

Displaying genes 431 – 440 of 2687 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.