Methanolobus zinderi SD-1

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanomicrobia

Order

Methanosarcinales

Family

Methanosarcinaceae

Genus

Methanolobus

Description

Methanolobus zinderi SD-1 is a notable archaeal species characterized by a single replicon, which is indicative of its genomic organization. The complete genome of this organism is accessible under the accession number CP058215.1. This information is crucial for researchers who study archaeal genomics and the metabolic pathways of methanogens. As a methanogen, Methanolobus zinderi SD-1 plays a significant role in the carbon cycle, particularly in anaerobic environments where it contributes to methane production. Methanogens like M. zinderi are known to utilize methanol or other one-carbon compounds as substrates for growth, ultimately producing methane as a metabolic byproduct. This process is essential for energy flow in various ecosystems, particularly in wetlands and other anaerobic habitats. The presence of a single replicon suggests a streamlined genome, which may facilitate efficient replication and maintenance of essential genes required for its methanogenic lifestyle. This genomic simplicity is often seen in extremophiles and organisms adapted to specific ecological niches. In summary, Methanolobus zinderi SD-1, with its single replicon and accessible genomic data, provides critical insights into archaeal biology and the ecological roles of methanogens in carbon cycling. Understanding its genome can further elucidate the mechanisms underlying methane production and its implications for global carbon dynamics.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanomicrobia
OrderMethanosarcinales
FamilyMethanosarcinaceae
GenusMethanolobus
SpeciesMethanolobus zinderi
StrainSD-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrumen
Biotic relationshipNot Available
Host(s)Ovis aries
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Methanolobus zinderi SD-1, Complete Genome

Gene Summary

Adenine Count

757865 bp

Thymine Count

755220 bp

Guanine Count

591328 bp

Cytosine Count

600540 bp

Genome Length

2704953 bp

Protein-coding Genes

2632 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf2180 family proteinHWN40_11970Not AvailableNegative2430954 - 24311939046.99
5,10-methylenetetrahydromethanopterin reductaseHWN40_11975Q9UXP0Positive2431606 - 243258634043.9
coenzyme f420 hydrogenase/dehydrogenase, beta subunit c-terminal domainHWN40_11980Q8PZ67Positive2432616 - 243364437627.1
nicotinamide-nucleotide adenylyltransferaseHWN40_11985Q9UXN8Positive2433657 - 243417819897.9
copper chaperone copz family proteinHWN40_11990O29901Negative2434212 - 243469418208.8
arsenite methyltransferaseHWN40_11995Q8TJK1Negative2434760 - 243581238864.5
hypothetical proteinHWN40_12000Not AvailablePositive2435862 - 24360447194.84
phzf family phenazine biosynthesis proteinHWN40_12005Q9KG32Negative2436169 - 243695728930.2
cysteine--trna ligaseHWN40_12010Q8R7T3Negative2437020 - 243845355243.6
Trna-cysNot AvailableNot AvailablePositive2438498 - 2438570Not Available

Displaying genes 2391 – 2400 of 2687 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.