Methanolobus zinderi SD-1

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanomicrobia

Order

Methanosarcinales

Family

Methanosarcinaceae

Genus

Methanolobus

Description

Methanolobus zinderi SD-1 is a notable archaeal species characterized by a single replicon, which is indicative of its genomic organization. The complete genome of this organism is accessible under the accession number CP058215.1. This information is crucial for researchers who study archaeal genomics and the metabolic pathways of methanogens. As a methanogen, Methanolobus zinderi SD-1 plays a significant role in the carbon cycle, particularly in anaerobic environments where it contributes to methane production. Methanogens like M. zinderi are known to utilize methanol or other one-carbon compounds as substrates for growth, ultimately producing methane as a metabolic byproduct. This process is essential for energy flow in various ecosystems, particularly in wetlands and other anaerobic habitats. The presence of a single replicon suggests a streamlined genome, which may facilitate efficient replication and maintenance of essential genes required for its methanogenic lifestyle. This genomic simplicity is often seen in extremophiles and organisms adapted to specific ecological niches. In summary, Methanolobus zinderi SD-1, with its single replicon and accessible genomic data, provides critical insights into archaeal biology and the ecological roles of methanogens in carbon cycling. Understanding its genome can further elucidate the mechanisms underlying methane production and its implications for global carbon dynamics.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanomicrobia
OrderMethanosarcinales
FamilyMethanosarcinaceae
GenusMethanolobus
SpeciesMethanolobus zinderi
StrainSD-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrumen
Biotic relationshipNot Available
Host(s)Ovis aries
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Methanolobus zinderi SD-1, Complete Genome

Gene Summary

Adenine Count

757865 bp

Thymine Count

755220 bp

Guanine Count

591328 bp

Cytosine Count

600540 bp

Genome Length

2704953 bp

Protein-coding Genes

2632 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf192 domain-containing proteinHWN40_11820C6A4G9Negative2406630 - 240698613284.2
stress response translation initiation inhibitor ycihHWN40_11825Q12UF1Positive2407070 - 240737811401.8
cysteine desulfurase nifsHWN40_11830B8DZS1Positive2407538 - 240870742255.1
iron-sulfur cluster assembly scaffold proteinHWN40_11835P0DMG1Positive2408730 - 240910113258.8
helix-turn-helix domain-containing proteinHWN40_11840Not AvailablePositive2409125 - 240948713429.0
hypothetical proteinHWN40_11845A0A1B2LS07Positive2409484 - 241072246054.3
inorganic phosphate transporterHWN40_11850O28476Positive2410835 - 241187236019.1
tigr00153 family proteinHWN40_11855O28475Positive2411869 - 241256126358.7
nad(p)/fad-dependent oxidoreductaseHWN40_11860P05410Negative2412580 - 241402853885.4
phosphoribosylaminoimidazolesuccinocarboxamide synthaseHWN40_11865Q46F30Negative2414087 - 241480027043.4

Displaying genes 2361 – 2370 of 2687 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.