Methanolobus zinderi SD-1

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanomicrobia

Order

Methanosarcinales

Family

Methanosarcinaceae

Genus

Methanolobus

Description

Methanolobus zinderi SD-1 is a notable archaeal species characterized by a single replicon, which is indicative of its genomic organization. The complete genome of this organism is accessible under the accession number CP058215.1. This information is crucial for researchers who study archaeal genomics and the metabolic pathways of methanogens. As a methanogen, Methanolobus zinderi SD-1 plays a significant role in the carbon cycle, particularly in anaerobic environments where it contributes to methane production. Methanogens like M. zinderi are known to utilize methanol or other one-carbon compounds as substrates for growth, ultimately producing methane as a metabolic byproduct. This process is essential for energy flow in various ecosystems, particularly in wetlands and other anaerobic habitats. The presence of a single replicon suggests a streamlined genome, which may facilitate efficient replication and maintenance of essential genes required for its methanogenic lifestyle. This genomic simplicity is often seen in extremophiles and organisms adapted to specific ecological niches. In summary, Methanolobus zinderi SD-1, with its single replicon and accessible genomic data, provides critical insights into archaeal biology and the ecological roles of methanogens in carbon cycling. Understanding its genome can further elucidate the mechanisms underlying methane production and its implications for global carbon dynamics.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanomicrobia
OrderMethanosarcinales
FamilyMethanosarcinaceae
GenusMethanolobus
SpeciesMethanolobus zinderi
StrainSD-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrumen
Biotic relationshipNot Available
Host(s)Ovis aries
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Methanolobus zinderi SD-1, Complete Genome

Gene Summary

Adenine Count

757865 bp

Thymine Count

755220 bp

Guanine Count

591328 bp

Cytosine Count

600540 bp

Genome Length

2704953 bp

Protein-coding Genes

2632 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
calcium/sodium antiporterHWN40_08165Q8TPA6Negative1666266 - 166721334023.7
pef-cterm sorting domain-containing proteinHWN40_08170Not AvailableNegative1667338 - 166797922612.8
vit1/ccc1 transporter family proteinHWN40_08175Q58061Negative1668092 - 166861618382.8
duf89 family proteinHWN40_08180O29161Positive1668774 - 166964932609.2
coot family nickel-binding proteinHWN40_08185Not AvailablePositive1669666 - 16698546793.38
type ii glyceraldehyde-3-phosphate dehydrogenaseHWN40_08190P58838Positive1669953 - 167096036464.8
bifunctional fructose-bisphosphatase/inositol-phosphate phosphataseHWN40_08195O26957Positive1670977 - 167178029321.1
nad(+)/nadh kinaseHWN40_08200Q8TKQ5Positive1671782 - 167261529975.3
homoaconitate hydrataseHWN40_08205Q8TKQ6Positive1672809 - 167398142852.5
tigr00288 family nyn domain-containing proteinHWN40_08210Q57905Negative1673978 - 167456822106.2

Displaying genes 1631 – 1640 of 2687 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.