Amphritea japonica

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Oceanospirillales

Family

Oceanospirillaceae

Genus

Amphritea

Description

Amphritea japonica is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism is notable for possessing three replicons, which are vital for its genetic stability and adaptability in various environments. The genetic information related to Amphritea japonica can be found in several accessions, specifically AP025761.1, AP025762.1, and AP014545.1. As a Gram-negative bacterium, Amphritea japonica features a distinctive cell wall structure that includes an outer membrane, which contributes to its resilience against certain antibiotics and environmental stresses. This trait is common among Gram-negative bacteria and plays a significant role in their survival strategies. The presence of multiple replicons may confer advantages in terms of genetic flexibility, allowing Amphritea japonica to adapt to fluctuating conditions in its habitat. Understanding the genetic architecture and traits of Amphritea japonica can provide insights into its ecological roles, particularly in marine environments where it may contribute to nutrient cycling and interact with other microbial communities. Overall, the characteristics of Amphritea japonica highlight its potential significance in microbiological research and ecological studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOceanospirillales
FamilyOceanospirillaceae
GenusAmphritea
SpeciesAmphritea japonica
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Amphritea japonica , Complete Genome

Gene Summary

Adenine Count

989943 bp

Thymine Count

996795 bp

Guanine Count

905068 bp

Cytosine Count

893892 bp

Genome Length

3785698 bp

Protein-coding Genes

3355 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribose-phosphate pyrophosphokinaseAMJAP_2644Q58761Positive2988193 - 298907733147.1
possible pseudogeneAMJAP_2645Q96Q83Positive2989074 - 298967623518.2
nitroreductaseAMJAP_2646Q56691Positive2989680 - 299041727008.3
conserved hypothetical proteinAMJAP_2647Not AvailableNegative2990631 - 299099612604.9
conserved hypothetical proteinAMJAP_2648Not AvailablePositive2991313 - 299202026118.2
signal transduction proteinAMJAP_2649Q9I310Negative2992207 - 2995734132979.0
flavodoxinAMJAP_2650P65368Negative2995991 - 299647917422.6
conserved hypothetical proteinAMJAP_2651Not AvailablePositive2996569 - 299693413814.7
cytochrome cAMJAP_2652P00083Negative2997017 - 299739713468.3
fumarate hydratase, class iAMJAP_2653P0AC34Negative2997571 - 299907654348.5

Displaying genes 6221 – 6230 of 6988 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.