Amphritea japonica

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Oceanospirillales

Family

Oceanospirillaceae

Genus

Amphritea

Description

Amphritea japonica is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism is notable for possessing three replicons, which are vital for its genetic stability and adaptability in various environments. The genetic information related to Amphritea japonica can be found in several accessions, specifically AP025761.1, AP025762.1, and AP014545.1. As a Gram-negative bacterium, Amphritea japonica features a distinctive cell wall structure that includes an outer membrane, which contributes to its resilience against certain antibiotics and environmental stresses. This trait is common among Gram-negative bacteria and plays a significant role in their survival strategies. The presence of multiple replicons may confer advantages in terms of genetic flexibility, allowing Amphritea japonica to adapt to fluctuating conditions in its habitat. Understanding the genetic architecture and traits of Amphritea japonica can provide insights into its ecological roles, particularly in marine environments where it may contribute to nutrient cycling and interact with other microbial communities. Overall, the characteristics of Amphritea japonica highlight its potential significance in microbiological research and ecological studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOceanospirillales
FamilyOceanospirillaceae
GenusAmphritea
SpeciesAmphritea japonica
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Amphritea japonica , Complete Genome

Gene Summary

Adenine Count

989943 bp

Thymine Count

996795 bp

Guanine Count

905068 bp

Cytosine Count

893892 bp

Genome Length

3785698 bp

Protein-coding Genes

3355 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trap dicarboxylate transporter dctp subunitAMJAP_2361Q315G1Negative2646383 - 264739936256.0
lysr family transcriptional regulator, glycine cleavage system transcriptional activatorAMJAP_2362P0A9F8Negative2647866 - 264875933578.3
molr family transcriptional regulatorAMJAP_2363O32207Negative2648878 - 264995139282.4
formate dehydrogenase, gamma subunitAMJAP_2364Q20719Positive2650089 - 265058017854.4
formate dehydrogenase, beta subunitAMJAP_2365Q46507Positive2650580 - 265219657780.9
formate dehydrogenase, alpha subunitAMJAP_2366Q795Y4Positive2652193 - 2655078105535.0
fdhd proteinAMJAP_2367O87816Positive2655080 - 265594931129.5
formate dehydrogenase, delta subunitAMJAP_2368Not AvailablePositive2655952 - 26561677882.41
possible pseudogeneAMJAP_2369Not AvailableNegative2656340 - 26564594353.52
conserved hypothetical proteinAMJAP_2370Not AvailableNegative2656644 - 265733325390.2

Displaying genes 5931 – 5940 of 6988 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.