Amphritea japonica

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Oceanospirillales

Family

Oceanospirillaceae

Genus

Amphritea

Description

Amphritea japonica is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism is notable for possessing three replicons, which are vital for its genetic stability and adaptability in various environments. The genetic information related to Amphritea japonica can be found in several accessions, specifically AP025761.1, AP025762.1, and AP014545.1. As a Gram-negative bacterium, Amphritea japonica features a distinctive cell wall structure that includes an outer membrane, which contributes to its resilience against certain antibiotics and environmental stresses. This trait is common among Gram-negative bacteria and plays a significant role in their survival strategies. The presence of multiple replicons may confer advantages in terms of genetic flexibility, allowing Amphritea japonica to adapt to fluctuating conditions in its habitat. Understanding the genetic architecture and traits of Amphritea japonica can provide insights into its ecological roles, particularly in marine environments where it may contribute to nutrient cycling and interact with other microbial communities. Overall, the characteristics of Amphritea japonica highlight its potential significance in microbiological research and ecological studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOceanospirillales
FamilyOceanospirillaceae
GenusAmphritea
SpeciesAmphritea japonica
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Amphritea japonica , Complete Genome

Gene Summary

Adenine Count

989943 bp

Thymine Count

996795 bp

Guanine Count

905068 bp

Cytosine Count

893892 bp

Genome Length

3785698 bp

Protein-coding Genes

3355 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptidyl-prolyl cis-trans isomerase cAMJAP_2271P0A9L7Negative2550676 - 25509579860.59
lysr family transcriptional regulatorAMJAP_2272Q9EXL7Positive2551084 - 255199834289.7
amino acid exporter lyseAMJAP_2273O05406Positive2552157 - 255275321506.3
conserved hypothetical proteinAMJAP_2274Q00790Negative2552782 - 255489679916.4
lysr family transcriptional regulatorAMJAP_2275P10183Negative2554987 - 255591035068.9
nadph-dependent fmn reductaseAMJAP_2276A0A0H2ZDT7Positive2556005 - 255658019957.3
cytochrome b561AMJAP_2277P75925Positive2556677 - 255724321260.5
conserved hypothetical proteinAMJAP_2278A4XPC6Positive2557240 - 255782721053.7
acyl-coa thioesterase yciaAMJAP_2279P0A1A2Negative2557886 - 255827814339.2
log family protein ygdhAMJAP_2280P48636Negative2558309 - 255885720044.1

Displaying genes 5841 – 5850 of 6988 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.